jdekanter / CHETAHLinks
scRNA-seq cell type identification
☆43Updated 5 years ago
Alternatives and similar repositories for CHETAH
Users that are interested in CHETAH are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- ☆33Updated 6 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆78Updated 3 years ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆16Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 2 years ago
- Single-cell Case Control Analysis☆50Updated 8 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- SCDC☆45Updated 3 weeks ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- ☆41Updated last month
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆32Updated 5 months ago
- ☆55Updated 4 years ago
- simpler single cell RNAseq data clustering☆40Updated 4 months ago
- ☆34Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago