aertslab / SCopeLoomR
R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters and markers, ...
☆41Updated 2 years ago
Alternatives and similar repositories for SCopeLoomR:
Users that are interested in SCopeLoomR are comparing it to the libraries listed below
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- ☆59Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆52Updated 2 months ago
- ☆48Updated 4 years ago
- scWGCNA☆56Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- A R package for advanced single cell data viz☆62Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆41Updated last year
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- ☆44Updated 5 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆32Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆30Updated last year
- ☆53Updated 4 years ago
- A pipeline for scRNA-seq data analysis☆12Updated last year
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆42Updated 2 weeks ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 4 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- ☆39Updated 3 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- ☆60Updated 4 years ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Mouse cell atlas☆60Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆28Updated 2 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆23Updated 3 years ago
- ☆38Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago