aertslab / SCopeLoomRLinks
R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters and markers, ...
☆44Updated 3 years ago
Alternatives and similar repositories for SCopeLoomR
Users that are interested in SCopeLoomR are comparing it to the libraries listed below
Sorting:
- ☆47Updated 5 years ago
- ☆55Updated 4 years ago
- ☆63Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- ☆30Updated 7 years ago
- ☆43Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- An R-based interface for loom files☆67Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- ☆39Updated 4 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆44Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 5 months ago
- Normalize CITEseq Data☆66Updated 2 weeks ago
- ☆19Updated 3 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆60Updated 2 years ago
- The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…☆23Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- R package containing the Cerebro application.☆40Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆50Updated 5 years ago