aertslab / SCopeLoomRLinks
R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters and markers, ...
☆47Updated 3 years ago
Alternatives and similar repositories for SCopeLoomR
Users that are interested in SCopeLoomR are comparing it to the libraries listed below
Sorting:
- ☆47Updated 5 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆43Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- ☆56Updated 5 years ago
- R/Bioconductor package for working with 10x scATACseq data☆41Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Updated 2 months ago
- ☆64Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Normalize CITEseq Data☆67Updated 3 months ago
- ☆30Updated 7 years ago
- A portable and fast single cell type identifier☆63Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆76Updated 2 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Updated 2 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- scRNA-seq cell type identification☆44Updated 6 years ago
- ☆54Updated last year
- ☆48Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated last week