Analysis pipeline for the adolescent mouse nervous system project
☆25Jun 5, 2026Updated last month
Alternatives and similar repositories for adolescent-mouse
Users that are interested in adolescent-mouse are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Algorithms for single-cell analysis☆29Jul 19, 2021Updated 5 years ago
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆38Jan 10, 2025Updated last year
- Allen Brain Atlas utilities, parsers and data structures☆11Jun 25, 2017Updated 9 years ago
- List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.☆14Sep 3, 2016Updated 9 years ago
- Cytograph version used for adult human-brain analysis☆102Jun 5, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- Python implementation of the Loom file format - http://loompy.org☆149Dec 16, 2024Updated last year
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- ☆45Jun 5, 2026Updated last month
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- ☆14Feb 21, 2023Updated 3 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆16Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆50Mar 1, 2018Updated 8 years ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Biclustering algorithm☆58Dec 11, 2017Updated 8 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆16Oct 17, 2017Updated 8 years ago
- Tools for working with single-neuron morphological reconstructions☆22Apr 16, 2026Updated 3 months ago
- R package for gene selection using k-NN graphs.☆14Jun 12, 2023Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 6 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆147Apr 5, 2024Updated 2 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)☆21Aug 17, 2017Updated 8 years ago
- ☆30Feb 1, 2023Updated 3 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19May 6, 2019Updated 7 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆23Feb 4, 2024Updated 2 years ago
- ☆62Jun 17, 2021Updated 5 years ago
- Doublet detection in single-cell RNA-seq data.☆98Feb 6, 2025Updated last year
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆11Sep 2, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 9 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…☆23Jun 16, 2017Updated 9 years ago
- ☆66Sep 15, 2020Updated 5 years ago
- Dorothea package in Python☆11Apr 5, 2022Updated 4 years ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆11May 19, 2019Updated 7 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆21Jan 17, 2023Updated 3 years ago