A R package for integrated scRNA-seq data analysis using the RPCI algorithm
☆45Mar 30, 2024Updated 2 years ago
Alternatives and similar repositories for RISC
Users that are interested in RISC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19Jun 17, 2026Updated last month
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆18Apr 4, 2022Updated 4 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆77Feb 27, 2023Updated 3 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- scWGCNA☆66Nov 8, 2022Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- ☆13Apr 16, 2021Updated 5 years ago
- Assessing the purity of single cell population☆152Jun 3, 2022Updated 4 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- Quasilinear data representations for single-cell omics data analysis☆42May 4, 2023Updated 3 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆81Jul 6, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆23Mar 29, 2023Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆90Dec 4, 2025Updated 7 months ago
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 6 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- Heterogeneity Induced Pre-Processing tOol☆19Aug 15, 2021Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆24May 8, 2020Updated 6 years ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆504Jul 1, 2026Updated 2 weeks ago
- Regulatory networks with Direct Information☆19Oct 14, 2019Updated 6 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Jun 13, 2024Updated 2 years ago
- Analaysis for the batch correction paper☆12Apr 26, 2025Updated last year
- R package for Flexible dot plots☆29Jun 19, 2022Updated 4 years ago
- ☆51Jan 16, 2020Updated 6 years ago
- Single Cell Epigenome-based Inference of Activity☆19Sep 27, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- ☆12May 30, 2023Updated 3 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆25Aug 15, 2023Updated 2 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Community-provided extensions to Seurat☆367Jun 29, 2026Updated 3 weeks ago
- ☆27Sep 2, 2021Updated 4 years ago
- Pathway-based trajectory inference method for time-series scRNAseq data☆26May 18, 2021Updated 5 years ago