Implementation of the Leiden algorithm called by reticulate in R. (CRAN)
☆44May 26, 2024Updated 2 years ago
Alternatives and similar repositories for leiden
Users that are interested in leiden are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implements the Leiden algorithm via an R interface☆13May 31, 2026Updated 5 months ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆13May 14, 2019Updated 7 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 9 months ago
- Space- and time-optimal algorithms for large single-cell expression matrices, with a focus on single-cell CRISPR screens.☆13Jul 31, 2026Updated 3 months ago
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated last year
- R package with utility functions for large-scale data☆12Jul 31, 2025Updated last year
- R extensions to N2 implementing approximate nearest neighbor search methods☆10Jun 14, 2026Updated 4 months ago
- ☆46Aug 13, 2024Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last month
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- scID☆14Oct 21, 2021Updated 5 years ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- Single Cell RNA Intron-Exon counting☆12May 7, 2020Updated 6 years ago
- Non Metric Space ( Approximate ) Library in R☆12Feb 2, 2023Updated 3 years ago
- ☆15Jun 3, 2019Updated 7 years ago
- Classification of Single cells by Transfer Learning☆12Oct 11, 2025Updated last year
- ☆34Jul 7, 2026Updated 3 months ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 5 years ago
- Single-cell Orientation Tracing☆21Jan 23, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Java program for computing the intermediacy of the nodes in a graph for the specified source and target nodes.☆11Jan 31, 2020Updated 6 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago
- ☆16Apr 4, 2023Updated 3 years ago
- ☆27Jul 9, 2025Updated last year
- ☆28May 16, 2025Updated last year
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- Single-cell differential expression☆22Oct 18, 2026Updated 2 weeks ago
- Machine learning explanations☆25Oct 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A small R package for finding timezone names from geographic coordinates☆12Feb 27, 2018Updated 8 years ago
- ☆76Feb 4, 2024Updated 2 years ago
- Advanced steps of the OSCA book☆17Aug 26, 2026Updated 2 months ago
- GSEA plots in ggplot2☆10Jan 21, 2024Updated 2 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Oct 5, 2026Updated 3 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆233Jul 2, 2026Updated 4 months ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year