TomKellyGenetics / leidenLinks
Implementation of the Leiden algorithm called by reticulate in R. (CRAN)
☆40Updated last year
Alternatives and similar repositories for leiden
Users that are interested in leiden are comparing it to the libraries listed below
Sorting:
- Visualising single-cell trajectories, including comparisons between two models 📈☆31Updated 3 years ago
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆80Updated 2 months ago
- ☆13Updated 5 months ago
- Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).☆80Updated last year
- ☆74Updated last year
- ☆95Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆28Updated last month
- R package for benchmarking single cell analysis methods☆32Updated last year
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated 2 years ago
- Exploring dimension-reduced embeddings☆110Updated 3 years ago
- R pkg for Hierarchical Dirichlet Process☆79Updated 2 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 2 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 2 months ago
- An R package providing programmatic access to Synapse☆37Updated last month
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Updated 2 years ago
- Monte Carlo Reference-based Consensus Clustering☆36Updated 5 years ago
- Demonstration of the use of an R package to organize a data analysis project☆21Updated 5 years ago
- NMF: A Flexible R package for Nonnegative Matrix Factorization☆151Updated 2 years ago
- pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data☆56Updated 4 months ago
- flowWorkspace☆45Updated 6 months ago
- Bioconductor facilities for parallel evaluation☆68Updated 2 weeks ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆11Updated 3 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Updated 8 months ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- R package for computation of (adjusted) rand-index and other such scores☆27Updated last year
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Implementation of the matrixStats API for sparse matrices☆53Updated 5 months ago