linnarsson-lab / cytographLinks
Algorithms for single-cell analysis
☆29Updated 4 years ago
Alternatives and similar repositories for cytograph
Users that are interested in cytograph are comparing it to the libraries listed below
Sorting:
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Updated 3 years ago
- ☆28Updated 7 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- ☆43Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 2 weeks ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Analysis pipeline for the adolescent mouse nervous system project☆24Updated 7 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 7 years ago
- ☆29Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆45Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 4 years ago
- Single-cell Case Control Analysis☆52Updated last week
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 7 months ago
- Single-cell Scalable Visualization and Analytics☆27Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Updated 5 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆19Updated 4 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago