linnarsson-lab / cytographLinks
Algorithms for single-cell analysis
☆29Updated 4 years ago
Alternatives and similar repositories for cytograph
Users that are interested in cytograph are comparing it to the libraries listed below
Sorting:
- ☆42Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆28Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated 2 years ago
- ☆29Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last month
- ☆24Updated 4 months ago
- ☆35Updated 6 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Landscape Single Cell Entropy☆20Updated 5 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- Analysis pipeline for the adolescent mouse nervous system project☆24Updated 7 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year