linnarsson-lab / cytographLinks
Algorithms for single-cell analysis
☆29Updated 3 years ago
Alternatives and similar repositories for cytograph
Users that are interested in cytograph are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- ☆23Updated last month
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- ☆41Updated 4 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated 3 weeks ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆28Updated 6 years ago
- ☆14Updated 6 years ago
- ☆17Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago