aertslab / cisTopicLinks
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
☆143Updated last year
Alternatives and similar repositories for cisTopic
Users that are interested in cisTopic are comparing it to the libraries listed below
Sorting:
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆112Updated last year
- Tools for single-cell data processing☆131Updated last year
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- R package to access DoRothEA's regulons☆153Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- chromatin Variability Across Regions (of the genome!)☆185Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Bench-marking classification tools for scRNA-seq data☆189Updated 3 years ago
- Clonotype Neighbor Graph Analysis☆93Updated 4 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 8 months ago
- SingleCellNet: classify single cells across species and platforms☆139Updated 2 years ago
- ☆131Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆180Updated last year
- Benchmarking computational single cell ATAC-seq methods☆184Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- ☆57Updated 7 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- ☆85Updated 5 years ago
- R script for the covid balf data analysis☆65Updated 5 years ago
- ☆59Updated 5 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆73Updated 4 years ago
- ☆46Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- RNA velocity estimation in Python☆175Updated 3 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago