aertslab / cisTopicLinks
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
☆141Updated last year
Alternatives and similar repositories for cisTopic
Users that are interested in cisTopic are comparing it to the libraries listed below
Sorting:
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 9 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- R package to access DoRothEA's regulons☆150Updated last year
- Tools for single-cell data processing☆126Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆205Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Bench-marking classification tools for scRNA-seq data☆188Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- R script for the covid balf data analysis☆65Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆95Updated 6 years ago
- ☆47Updated 3 years ago
- ☆131Updated last year
- ☆58Updated 4 years ago
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆192Updated 2 years ago
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆190Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆167Updated 5 months ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago
- URD - Reconstruction of Branching Developmental Trajectories☆124Updated 4 years ago