Methods to compute Local Inverse Simpson's Index (LISI)
☆78Sep 2, 2021Updated 4 years ago
Alternatives and similar repositories for LISI
Users that are interested in LISI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 9 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆666Jun 5, 2026Updated last month
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆177Jan 26, 2024Updated 2 years ago
- ☆46May 17, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 7 years ago
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 2 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- scPred package for cell type prediction from scRNA-seq data☆105Jan 18, 2024Updated 2 years ago
- A Bayesian model for compositional single-cell data analysis☆199Jan 13, 2026Updated 6 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆124May 24, 2026Updated 2 months ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- Assessing the purity of single cell population☆152Jun 3, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- Imputation method for scRNA-seq based on low-rank approximation☆80Dec 14, 2023Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 5 months ago
- Single-cell Case Control Analysis☆59Feb 26, 2026Updated 4 months ago
- Fast Wilcoxon and auROC☆214May 5, 2026Updated 2 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- ☆133Mar 27, 2022Updated 4 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- Scripts and Snakemake pipeline used in the EMBL-ABR webinar☆13Jul 24, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cell type prioritization in single-cell data☆144Mar 26, 2026Updated 3 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 2, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Cluster Identity Predictor (R package implementation)☆22Mar 8, 2022Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆104Apr 16, 2026Updated 3 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆459Apr 11, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆61Nov 18, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆299Jun 16, 2026Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- ☆27May 16, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆36Jan 8, 2025Updated last year
- Methods to discover gene programs on single-cell data☆197Updated this week
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago