immunogenomics / LISILinks
Methods to compute Local Inverse Simpson's Index (LISI)
☆68Updated 4 years ago
Alternatives and similar repositories for LISI
Users that are interested in LISI are comparing it to the libraries listed below
Sorting:
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- ☆125Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- ☆62Updated 6 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- R package for semi-supervised single-cell data integration☆88Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆77Updated 7 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆65Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- Assessing the purity of single cell population☆136Updated 3 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- ☆71Updated 2 years ago
- Metacell - Single-cell mRNA Analysis☆116Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated 3 weeks ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- ☆56Updated 11 months ago
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 9 months ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆71Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆113Updated 7 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year