Methods to compute Local Inverse Simpson's Index (LISI)
☆83Sep 2, 2021Updated 5 years ago
Alternatives and similar repositories for LISI
Users that are interested in LISI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classification of Single cells by Transfer Learning☆12Oct 11, 2025Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Oct 15, 2026Updated 2 weeks ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆181Jan 26, 2024Updated 2 years ago
- ☆46May 17, 2022Updated 4 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 8 months ago
- Normalize CITEseq Data☆73Nov 9, 2025Updated 11 months ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- A Bayesian model for compositional single-cell data analysis☆204Jan 13, 2026Updated 9 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆127May 24, 2026Updated 5 months ago
- Assessing the purity of single cell population☆157Jun 3, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Methods for detecting doublets in single-cell sequencing data☆276Oct 18, 2026Updated 2 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆574Mar 21, 2025Updated last year
- Single-cell Case Control Analysis☆59Oct 13, 2026Updated 2 weeks ago
- Cell type prioritization in single-cell data☆153Mar 26, 2026Updated 7 months ago
- Detect doublets in single-cell RNA-seq data☆85Jul 3, 2019Updated 7 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 6 months ago
- Benchmarking analysis of data integration tools☆435Apr 27, 2026Updated 6 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆82Dec 14, 2023Updated 2 years ago
- scPred package for cell type prediction from scRNA-seq data☆107Jan 18, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- NicheNet: predict active ligand-target links between interacting cells☆684Oct 23, 2026Updated last week
- ☆314Jun 16, 2026Updated 4 months ago
- Provide programmatic access to the tonsil cell atlas datasets☆10Oct 22, 2026Updated last week
- Flexible, probablistic metrics for quality control of scRNA-seq data☆23May 27, 2026Updated 5 months ago
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- Reference mapping for single-cell genomics☆414Jun 26, 2026Updated 4 months ago
- Detect doublets in single-cell RNA-seq data☆185Dec 29, 2020Updated 5 years ago
- ☆56Dec 13, 2020Updated 5 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- R package for analysing single cell data☆71Dec 8, 2022Updated 3 years ago
- Methods to discover gene programs on single-cell data☆213Oct 12, 2026Updated 3 weeks ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆77Dec 9, 2021Updated 4 years ago
- R package for pathway analysis in scRNA-seq data☆81Aug 17, 2024Updated 2 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 4 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆315Jun 30, 2026Updated 4 months ago