linnarsson-lab / loompy
Python implementation of the Loom file format - http://loompy.org
☆142Updated 2 months ago
Alternatives and similar repositories for loompy:
Users that are interested in loompy are comparing it to the libraries listed below
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- ☆67Updated 6 years ago
- Tools for single-cell data processing☆122Updated 9 months ago
- Doublet detection in single-cell RNA-seq data.☆91Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- RNA velocity estimation in Python☆164Updated last year
- A SingleCell RNASeq pre-processing snakemake workflow☆146Updated 2 years ago
- Scanpy use cases.☆82Updated 4 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- Fast visualization tool for large-scale and high dimensional single-cell data☆69Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆143Updated 4 years ago
- ☆67Updated 10 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆105Updated 2 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated last month
- Java tools for analyzing Drop-seq data☆125Updated last month
- Single Cell Cluster Evaluation☆92Updated 3 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆65Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆87Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆91Updated 2 years ago
- A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments☆124Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆101Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 4 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆125Updated 8 months ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆117Updated 2 years ago
- Conversion between scRNA-seq objects☆160Updated this week