malhamdoosh / EGSEALinks
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
☆10Updated last year
Alternatives and similar repositories for EGSEA
Users that are interested in EGSEA are comparing it to the libraries listed below
Sorting:
- The blog of tidyomics☆14Updated 2 months ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 5 months ago
- Gene-level general linear mixed model☆22Updated 8 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated this week
- R package for benchmarking single cell analysis methods☆32Updated last year
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- This is the ensembldb development repository.☆35Updated last month
- Clone of the Bioconductor repository for the basilisk package.☆28Updated 3 weeks ago
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- Interactive benchmarking of ranking and assignment methods☆16Updated 2 months ago
- Template for building a bioconductor workshop package using github actions☆21Updated 2 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆23Updated this week
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆35Updated 11 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 9 months ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 8 months ago
- R interface to morpheus.js heatmap widget☆38Updated 4 years ago
- The KEGGgraph package to parse KEGG pathways in R into graph objects☆14Updated 5 months ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆30Updated 4 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆13Updated 9 months ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago