malhamdoosh / EGSEALinks
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
☆10Updated last year
Alternatives and similar repositories for EGSEA
Users that are interested in EGSEA are comparing it to the libraries listed below
Sorting:
- the manifesto, workshops and tutorials of the tidy transcriptomics☆13Updated last month
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 5 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last month
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 7 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆20Updated 10 months ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- Gene-level general linear mixed model☆21Updated 4 months ago
- Code for EpiMap data browser☆14Updated last year
- zero-inflated negative binomial gene expression in R☆20Updated 7 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 2 months ago
- Interactive benchmarking of ranking and assignment methods☆16Updated last month
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Differential Correlation across Ranked Samples☆12Updated 2 years ago
- Core utilities for single-cell RNA-seq☆12Updated last month
- Reproducible GSEA Benchmarking☆13Updated 3 weeks ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Clone of the Bioconductor repository for the basilisk package.☆27Updated 2 weeks ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- CellAnn☆12Updated last year