Alternatives and similar repositories for EGSEA

Users that are interested in EGSEA are comparing it to the libraries listed below

• tidyomics / tidyomicsBlog_ARCHIVE
  The blog of tidyomics
  ☆14Updated 6 months ago
• lgatto / tidies
  A Grammar of Data Manipulation for Omics Data
  ☆21Updated 5 years ago
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 4 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last month
• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆25Updated 7 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 5 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆24Updated 3 months ago
• lgeistlinger / EnrichmentBrowser
  Seamless navigation through combined results of set-based and network-based enrichment analysis
  ☆21Updated 4 months ago
• waldronlab / cBioPortalData
  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
  ☆33Updated 2 months ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆40Updated last year
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated last week
• LTLA / basilisk
  Clone of the Bioconductor repository for the basilisk package.
  ☆29Updated 2 months ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• DiseaseNeuroGenomics / dreamlet
  Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models
  ☆20Updated 2 months ago
• shazanfar / DCARS
  Differential Correlation across Ranked Samples
  ☆12Updated 2 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 2 months ago
• csoneson / iCOBRA
  Interactive benchmarking of ranking and assignment methods
  ☆16Updated last month
• statOmics / zingeR
  zero-inflated negative binomial gene expression in R
  ☆20Updated 7 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated 3 months ago
• Bioconductor / BuildABiocWorkshop
  Template for building a bioconductor workshop package using github actions
  ☆21Updated 6 months ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆22Updated last year
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated 2 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 6 years ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆35Updated last year
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated last year
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated 2 months ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated this week