malhamdoosh / EGSEA
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
☆10Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for EGSEA
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆12Updated 6 months ago
- Gene-level general linear mixed model☆18Updated 2 months ago
- Toolbox package for organizing and working with TCGA data☆23Updated 3 weeks ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 2 years ago
- R interface to megadepth: BigWig and BAM related utilities☆11Updated 6 months ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated this week
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- R package for Flexible dot plots☆26Updated 2 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 6 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- Template for building a bioconductor workshop package using github actions☆19Updated 4 months ago
- Core utilities for single-cell RNA-seq☆12Updated 9 months ago
- Code for EpiMap data browser☆14Updated 5 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated this week
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated 11 months ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Interactive benchmarking of ranking and assignment methods☆14Updated 3 weeks ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago