This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
☆11Jan 21, 2024Updated 2 years ago
Alternatives and similar repositories for EGSEA
Users that are interested in EGSEA are comparing it to the libraries listed below
Sorting:
- ☆29Mar 16, 2023Updated 2 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- ☆11Dec 17, 2025Updated 2 months ago
- Single sample pathway analysis tools for omics data☆13Nov 9, 2024Updated last year
- High-performance sparse data representation and manipulation in R☆11Dec 16, 2025Updated 2 months ago
- ☆10May 25, 2025Updated 9 months ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Reproducible GSEA Benchmarking☆14Oct 30, 2025Updated 4 months ago
- Tools Databases Resources in Metabolomics & Integrated Omics in 2015-2016☆12Mar 7, 2020Updated 5 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆84Jul 22, 2025Updated 7 months ago
- Issues and pull requests for BiocStyle should go here.☆14Oct 30, 2025Updated 4 months ago
- Markdown version of Cytoscape manual☆12Sep 27, 2025Updated 5 months ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆17Jan 7, 2020Updated 6 years ago
- Function Enrichment analysis and Network construction☆12Dec 10, 2025Updated 2 months ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Oct 17, 2025Updated 4 months ago
- A toolbox for sparse contrastive principal component analysis☆12Feb 10, 2025Updated last year
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Oct 30, 2025Updated 4 months ago
- Helper script for bioconductor/bioconductor_docker☆13Updated this week
- ☆13Mar 31, 2025Updated 11 months ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆15May 25, 2025Updated 9 months ago
- Introduction to the Bioconductor project☆19Oct 17, 2025Updated 4 months ago
- Bioconductor package for management of multi-assay data☆73Nov 17, 2025Updated 3 months ago
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- an R package for deep mining gene co-expression networks in multi-trait expression data☆21Jan 23, 2026Updated last month
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Oct 30, 2025Updated 4 months ago
- scaffold☆18Aug 13, 2018Updated 7 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Feb 8, 2020Updated 6 years ago
- Difference in Intercellular Communication from scRNA-seq data☆24Oct 14, 2025Updated 4 months ago
- a Graph database and R package for omic data integration☆19Oct 28, 2016Updated 9 years ago
- Docker Containers for Bioconductor☆89Feb 23, 2026Updated last week
- Template for building a bioconductor workshop package using github actions☆22Jun 26, 2025Updated 8 months ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆22Oct 7, 2017Updated 8 years ago
- CDSeq R Package☆21Jul 1, 2025Updated 8 months ago
- Read RDS files, in Python☆26Feb 23, 2026Updated last week
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆21Feb 4, 2024Updated 2 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21May 23, 2025Updated 9 months ago
- Update RCytoscape to work for Cytoscape 3.0 and higher using CyREST☆16Feb 3, 2018Updated 8 years ago
- Foundation of vector-like and list-like containers in Bioconductor☆17Oct 30, 2025Updated 4 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Sep 29, 2025Updated 5 months ago