theislab / pagaLinks
Mapping out the coarse-grained connectivity structures of complex manifolds.
☆231Updated 5 years ago
Alternatives and similar repositories for paga
Users that are interested in paga are comparing it to the libraries listed below
Sorting:
- RNA velocity estimation in Python☆174Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆215Updated last year
- Comparison of methods for trajectory inference on single-cell data 🥇☆218Updated 2 years ago
- Batch balanced KNN☆174Updated 2 years ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆148Updated 11 months ago
- CellRank: dynamics from multi-view single-cell data☆407Updated last week
- Simple simulation of single-cell RNA sequencing data☆232Updated last week
- Panoramic stitching of single cell data☆292Updated 4 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆169Updated 7 months ago
- Detect doublets in single-cell RNA-seq data☆159Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆178Updated last year
- Collection of public scRNA-Seq datasets used by our group☆173Updated 4 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆375Updated last year
- ☆131Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data.☆205Updated 3 weeks ago
- LIANA+: an all-in-one framework for cell-cell communication☆245Updated this week
- data and model repository for single-cell data☆136Updated last year
- A collection of 50+ trajectory inference methods within a common interface 📥📤☆131Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆311Updated last year
- Python package to perform enrichment analysis from omics data.☆238Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆224Updated last year
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆194Updated 2 years ago
- A software package for analyzing snapshots of developmental processes☆149Updated 3 years ago
- Multiome GRN inference.☆130Updated last year
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆178Updated last week
- A Bayesian model for compositional single-cell data analysis☆182Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆275Updated last year
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆239Updated 3 months ago