Reconstruction of spatial context of gene expression with optimal transport
☆11Mar 14, 2019Updated 7 years ago
Alternatives and similar repositories for novoSpaRc
Users that are interested in novoSpaRc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- ☆132Nov 17, 2023Updated 2 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆23May 8, 2020Updated 5 years ago
- Python toolbox for multi-omics data mapping and analysis☆26Apr 13, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- sake☆29Feb 8, 2023Updated 3 years ago
- ☆13Jan 6, 2021Updated 5 years ago
- ☆18Jun 13, 2019Updated 6 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- ☆10Jan 22, 2026Updated 2 months ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Mar 26, 2026Updated 3 weeks ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆38Oct 7, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Landscape Single Cell Entropy☆22Aug 24, 2020Updated 5 years ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- Scalable Tool for Gene Network Reverse Engineering☆27Nov 6, 2025Updated 5 months ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆33Jul 27, 2020Updated 5 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- ☆14Aug 9, 2024Updated last year
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated 7 months ago
- Pathway-Regularized Matrix Factorization☆12Apr 6, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 2 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Use IPython notebook interactively on a HPC system☆20Mar 26, 2014Updated 12 years ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- density growing clustering☆10Dec 2, 2021Updated 4 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated 2 months ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆17Feb 8, 2019Updated 7 years ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆31Oct 6, 2025Updated 6 months ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 4 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆98Nov 24, 2020Updated 5 years ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆22Mar 25, 2026Updated 3 weeks ago