Reconstruction of spatial context of gene expression with optimal transport
☆11Mar 14, 2019Updated 7 years ago
Alternatives and similar repositories for novoSpaRc
Users that are interested in novoSpaRc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- ☆134Nov 17, 2023Updated 2 years ago
- Python toolbox for multi-omics data mapping and analysis☆28Apr 13, 2023Updated 3 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆24May 8, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- sake☆29Feb 8, 2023Updated 3 years ago
- RcisTarget: Transcription factor binding motif enrichment☆49Mar 4, 2024Updated 2 years ago
- ☆13Jan 6, 2021Updated 5 years ago
- ☆18Jun 13, 2019Updated 7 years ago
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated 10 months ago
- ☆10Jan 22, 2026Updated 6 months ago
- 🏺 Exploring novel tumor epitope identification☆39Oct 7, 2020Updated 5 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆32Mar 26, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆24Jun 3, 2018Updated 8 years ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 5 years ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 7 months ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆33Jul 27, 2020Updated 6 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- The codes and files for the study of subsolid nodules (SSN).☆15Oct 13, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pathway-Regularized Matrix Factorization☆12Apr 6, 2020Updated 6 years ago
- MERFISHTools implement a Bayesian framework for accurately predicting gene or transcript expression from MERFISH data. On top, they provi…☆14Aug 9, 2019Updated 6 years ago
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- density growing clustering☆10Dec 2, 2021Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- ☆12Apr 6, 2022Updated 4 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆18Feb 8, 2019Updated 7 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆41Jun 6, 2024Updated 2 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆24Apr 10, 2025Updated last year