Reconstruction of spatial context of gene expression with optimal transport
☆11Mar 14, 2019Updated 6 years ago
Alternatives and similar repositories for novoSpaRc
Users that are interested in novoSpaRc are comparing it to the libraries listed below
Sorting:
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- ☆132Nov 17, 2023Updated 2 years ago
- Python toolbox for multi-omics data mapping and analysis☆26Apr 13, 2023Updated 2 years ago
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago
- Single-cell Orientation Tracing☆22Jan 23, 2022Updated 4 years ago
- ☆19Jun 13, 2019Updated 6 years ago
- Multithreaded Gephi Force Atlas2 Layout in 2 or 3-d☆23May 8, 2020Updated 5 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28May 15, 2024Updated last year
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago
- Scalable Tool for Gene Network Reverse Engineering☆25Nov 6, 2025Updated 4 months ago
- Bayesian Logistic Regression with Hyper-LASSO priors☆10Dec 14, 2025Updated 2 months ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆31Dec 9, 2025Updated 3 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)☆32Jul 27, 2020Updated 5 years ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing☆13Jan 26, 2020Updated 6 years ago
- scRNAseq clustering tool☆11Apr 14, 2020Updated 5 years ago
- public production version of sequin to share with the public☆11Jan 6, 2025Updated last year
- density growing clustering☆10Dec 2, 2021Updated 4 years ago
- Reconstruction of complex single-cell trajectories using CellRouter☆46Dec 14, 2018Updated 7 years ago
- 🏺 Exploring novel tumor epitope identification☆38Oct 7, 2020Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Jun 6, 2024Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- A Demultiplexing Tool for Illumina Sequencers☆10Sep 27, 2016Updated 9 years ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- ☆12Dec 21, 2021Updated 4 years ago
- Kinase Activity Predictions from shotgun proteomics☆12Apr 18, 2017Updated 8 years ago
- ☆13Mar 1, 2026Updated last week
- Importing and manipulating Hi-C data in R☆12Jul 17, 2025Updated 7 months ago
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model☆12Jun 10, 2023Updated 2 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Allele-specific modeling of diploid Hi-C data☆12May 6, 2021Updated 4 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- This is an official replacement for https://bitbucket.org/feeldead/gfold☆10Aug 30, 2020Updated 5 years ago
- ☆13Dec 20, 2025Updated 2 months ago