Genetic maps in autopolyploids
☆31Jan 12, 2026Updated last month
Alternatives and similar repositories for MAPpoly
Users that are interested in MAPpoly are comparing it to the libraries listed below
Sorting:
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 3 months ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆32Mar 8, 2025Updated 11 months ago
- QTL analysis in diallel populations☆12Dec 2, 2025Updated 3 months ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆31Updated this week
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 5 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆39Dec 27, 2023Updated 2 years ago
- ☆12Feb 16, 2025Updated last year
- PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of…☆15Apr 13, 2021Updated 4 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- An R package to compute relationship matrices for diploid and autotetraploid species☆22Dec 12, 2025Updated 2 months ago
- GWAS software that can handle autopolyploids☆32Oct 14, 2025Updated 4 months ago
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Dec 12, 2025Updated 2 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated 3 weeks ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Jul 24, 2024Updated last year
- Differential k-mer analysis☆40Jan 29, 2024Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 5 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- ☆14Jul 27, 2019Updated 6 years ago
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆28Dec 5, 2024Updated last year
- ☆16Jun 30, 2022Updated 3 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆21Feb 5, 2023Updated 3 years ago
- A library for running k-mers based GWAS☆125Oct 29, 2024Updated last year
- A parallel wrapper for LTR_FINDER☆55Mar 23, 2025Updated 11 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆38Apr 28, 2023Updated 2 years ago
- Pangenome-based genome inference☆157Dec 1, 2025Updated 3 months ago
- SINE annotation tool for plant genomes☆18Jan 21, 2024Updated 2 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆23Oct 26, 2020Updated 5 years ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated 3 weeks ago
- ☆33Mar 19, 2025Updated 11 months ago
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago