Genotype Calling with Uncertainty from Sequencing Data in Polyploids ๐๐๐ฅ๐ ๐ฅ
โ33Mar 23, 2026Updated 7 months ago
Alternatives and similar repositories for polyRAD
Users that are interested in polyRAD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genetic maps in autopolyploidsโ33Jan 12, 2026Updated 9 months ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.โ20Nov 17, 2025Updated 11 months ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Dataโ33Mar 17, 2026Updated 7 months ago
- QTL analysis in diallel populationsโ13Mar 13, 2026Updated 7 months ago
- Linkage Disequilibrium Shrinkage Estimation for Polyploidsโ13Sep 9, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer โข AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SNP genotyping in polyploidsโ17Aug 12, 2020Updated 6 years ago
- Genetic Linkage Maps in Autopolyploids v 2.0โ10Jun 13, 2026Updated 4 months ago
- An R package to compute relationship matrices for diploid and autopolyploid speciesโ12Sep 30, 2026Updated last month
- GWAS software that can handle autopolyploidsโ36Sep 21, 2026Updated last month
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and bโฆโ40Dec 27, 2023Updated 2 years ago
- PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist ofโฆโ15Apr 13, 2021Updated 5 years ago
- โ17Oct 7, 2024Updated 2 years ago
- โ28Mar 13, 2026Updated 7 months ago
- Added functions for Echidna in Rโ11Apr 14, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient โข AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Distribution maps and niche models for venomous snakes.โ12Mar 22, 2026Updated 7 months ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.โ38Nov 3, 2023Updated 2 years ago
- a short graduate population biology courseโ13Feb 22, 2023Updated 3 years ago
- An effort to automate image post processing for natural history collectionsโ10Nov 22, 2022Updated 3 years ago
- โ11Feb 16, 2025Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Modelsโ18Sep 23, 2026Updated last month
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluationโ14Jun 22, 2016Updated 10 years ago
- R package for fitting high-dimensional multivariate linear mixed effect modelsโ41Sep 16, 2026Updated last month
- Using Digitized Collections-Based Data in Research: Applications for Ecology, Phylogenetics, and Biogeography Botany 2026.โ16Aug 4, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways โข AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package to compute relationship matrices for diploid and autotetraploid speciesโ24Dec 12, 2025Updated 10 months ago
- Benchmarking variant calling in polyploidsโ16Nov 26, 2021Updated 4 years ago
- โ14Dec 3, 2024Updated last year
- โ18Apr 26, 2026Updated 6 months ago
- Build haplotye and generate figuresโ20Nov 4, 2025Updated 11 months ago
- โ38Apr 13, 2026Updated 6 months ago
- Taxon-aware analysis of clustered protein sequencesโ31Jul 1, 2024Updated 2 years ago
- Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.โ43Feb 20, 2026Updated 8 months ago
- Using genome-wide markers for polyploid breedingโ14May 2, 2026Updated 5 months ago
- End-to-end encrypted email - Proton Mail โข AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexibleโ33Aug 18, 2026Updated 2 months ago
- A KMER-based genome-wIde Assocation testing approach on polyploidsโ72Jul 29, 2026Updated 3 months ago
- Fitting latent factor mixed modelsโ13Jun 12, 2020Updated 6 years ago
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiospermโ21Feb 5, 2023Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.โ69Mar 5, 2018Updated 8 years ago
- Statistical methods for forest genetic resources analystsโ40Aug 10, 2026Updated 2 months ago
- R front-end for TASSEL 5โ35Oct 21, 2026Updated last week