Alternatives and similar repositories for polyRAD:

Users that are interested in polyRAD are comparing it to the libraries listed below

• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 5 months ago
• hemstrow / snpR
  ☆30Updated 2 weeks ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆37Updated last year
• bodkan / demografr
  Fast and simple simulation-based population genetic inference in R
  ☆27Updated this week
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆28Updated 2 weeks ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated 4 months ago
• EricArcher / strataG
  strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
  ☆25Updated last week
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• laurabenestan / RDA_outlier
  Redundancy Analysis allowing to both estimate the percent of genomic variation explained by each variable as well as to detect the putati…
  ☆8Updated 5 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆29Updated last month
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆69Updated 10 months ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆18Updated 3 years ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆17Updated 6 years ago
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆19Updated 3 months ago
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆42Updated last week
• jendelman / diaQTL
  QTL analysis in diallel populations
  ☆11Updated last year
• PlantandFoodResearch / MCHap
  Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
  ☆18Updated 6 months ago
• thierrygosselin / assigner
  Population assignment analysis using R
  ☆17Updated 4 months ago
• rystanley / genepopedit
  Simple and flexible manipulation of genomic data.
  ☆15Updated 9 months ago
• rramadeu / AGHmatrix
  An R package to compute relationship matrices for diploid and autopolyploid species
  ☆11Updated 4 months ago
• ANGSD / NgsRelate
  ☆43Updated last year
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 5 months ago
• stevemussmann / BayesAss3-SNPs
  Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
  ☆15Updated 3 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 8 months ago
• gbradburd / SpaceMix
  ☆30Updated 2 years ago
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆15Updated 3 months ago
• NESCent / popgenInfo
  Vignettes for Population Genetics in R
  ☆25Updated 4 years ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆56Updated this week