pblischak / polyploid-genotyping
SNP genotyping in polyploids
☆16Updated 4 years ago
Alternatives and similar repositories for polyploid-genotyping:
Users that are interested in polyploid-genotyping are comparing it to the libraries listed below
- Infer the age of ancestral nodes in a tree sequence.☆20Updated last month
- Minimal Assumption Genomic Inference of Coalescence☆14Updated last year
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last week
- ☆13Updated last year
- ☆11Updated 5 years ago
- R Package for performing Qst-Fst analyses☆21Updated 7 years ago
- ☆18Updated last year
- ☆29Updated last week
- ☆19Updated 4 months ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆24Updated last week
- Suite of tools for pangenomics built using vg☆21Updated 3 weeks ago
- ☆11Updated last year
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Genetic Map Comparison☆20Updated 2 years ago
- ☆12Updated 9 months ago
- ☆17Updated 9 years ago
- An R package to detect selection in biological pathways☆14Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Automated and distributed population genetic model inference from allele frequency spectra☆15Updated 2 weeks ago
- ☆10Updated 3 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆19Updated 8 months ago
- machine learning applications for dadi☆14Updated 3 weeks ago
- Sampling and inference of genealogies with recombination☆29Updated 4 months ago
- Module for analysing admixture graphs☆28Updated 6 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated last year
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year