pblischak / polyploid-genotypingLinks
SNP genotyping in polyploids
☆17Updated 5 years ago
Alternatives and similar repositories for polyploid-genotyping
Users that are interested in polyploid-genotyping are comparing it to the libraries listed below
Sorting:
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 3 weeks ago
- Module for analysing admixture graphs☆29Updated 7 years ago
- Demographic inference from whole genomes☆13Updated 3 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated 3 months ago
- ☆15Updated 2 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- ☆11Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- ☆17Updated 9 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Infer the age of ancestral nodes in a tree sequence.☆23Updated last month
- an R package for admixture analyses☆17Updated 10 years ago
- Suite of tools for pangenomics built using vg☆24Updated 4 months ago
- R Package for performing Qst-Fst analyses☆21Updated 8 years ago
- ☆15Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆27Updated 6 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated last week
- ☆20Updated last year
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆20Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- ☆11Updated 6 years ago
- ☆44Updated 8 months ago
- ☆31Updated 2 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- The MafFilter genome alignment processor☆19Updated 6 months ago