pblischak / polyploid-genotypingLinks
SNP genotyping in polyploids
☆17Updated 5 years ago
Alternatives and similar repositories for polyploid-genotyping
Users that are interested in polyploid-genotyping are comparing it to the libraries listed below
Sorting:
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Demographic inference from whole genomes☆13Updated 2 years ago
- ☆30Updated 2 weeks ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated last month
- ☆14Updated 2 years ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- ☆15Updated 5 years ago
- ☆11Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Suite of tools for pangenomics built using vg☆23Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- ☆43Updated 5 months ago
- ☆13Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆18Updated 8 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆25Updated 5 years ago
- ☆11Updated 5 years ago
- ☆11Updated 3 years ago
- Two locus likelihoods and ARGs under changing population size☆14Updated 4 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Repository for pipeline code☆26Updated last year
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- An R package for reproducible and automated ADMIXTOOLS analyses☆33Updated 6 months ago
- Infer the age of ancestral nodes in a tree sequence.☆21Updated last month
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- The MafFilter genome alignment processor☆19Updated 3 months ago
- ☆19Updated last year