Alternatives and similar repositories for genomegaMap

Users that are interested in genomegaMap are comparing it to the libraries listed below

• gengit / PosiGene
  ☆26Updated 4 years ago
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated 7 months ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆33Updated 3 months ago
• bayesiancook / phylobayes
  PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)
  ☆15Updated 3 years ago
• TurakhiaLab / ROADIES
  Tool for fully-automated inference of species trees from raw genome assemblies
  ☆38Updated last month
• linudz / caastools
  CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.
  ☆19Updated last year
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆32Updated 3 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆42Updated 5 months ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 5 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• blackrim / phyutility
  ☆22Updated 11 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆30Updated 7 months ago
• at-cg / RAFT
  ☆25Updated 10 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• CAFS-bioinformatics / P_RNA_scaffolder
  use paired-end transcriptome reads to scaffold genomes
  ☆11Updated 6 years ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• PatrickKueck / FASconCAT-G
  FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…
  ☆34Updated last year
• Rowena-h / BUSCOfilter
  A tool to filter BUSCO output into single-copy gene files for phylogenomics
  ☆13Updated 11 months ago
• GDKO / AvP
  Automatic evaluation of HGTs
  ☆30Updated 5 months ago
• h836472 / ContScout
  ContScout sequence contamination filter tool
  ☆20Updated last month
• hillerlab / ForwardGenomics
  Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
  ☆23Updated 2 years ago
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated last year
• simonwhelan / Divvier
  A program for divvying or partially filtering multiple sequence alignments
  ☆26Updated 5 years ago
• MrTomRod / orthofinder-tools
  Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …
  ☆19Updated last year
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated last week
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆51Updated 3 years ago
• mokuno3430 / blastn2dotplots
  blastn2dotplots: multiple dot-plot visualizer
  ☆17Updated 3 weeks ago
• LANL-Bioinformatics / PhaME
  Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…
  ☆33Updated last year