danny-wilson / genomegaMapLinks
Within-species genome-wide dN/dS estimation from very many genomes
☆22Updated 5 years ago
Alternatives and similar repositories for genomegaMap
Users that are interested in genomegaMap are comparing it to the libraries listed below
Sorting:
- ☆26Updated 4 years ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- ☆22Updated 11 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated last year
- Multi-genome synteny block visualization tool☆50Updated last month
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- An R package to infer and analyze synteny networks from protein sequences☆35Updated 4 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Automatic evaluation of HGTs☆30Updated 10 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 4 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆41Updated 3 weeks ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆44Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆23Updated last week
- Gene tree - species tree reconciliation from gene tree distributions☆35Updated 3 weeks ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆33Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated last year
- ☆33Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 3 months ago
- ☆28Updated last year
- Yet another Hi-C scaffolding tool☆22Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- Computational Analysis of Gene Expression Evolution☆44Updated 3 months ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago