Alternatives and similar repositories for genomegaMap

Users that are interested in genomegaMap are comparing it to the libraries listed below

• GDKO / AvP
  Automatic evaluation of HGTs
  ☆28Updated 3 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆37Updated 3 months ago
• bayesiancook / phylobayes
  PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)
  ☆15Updated 3 years ago
• blackrim / phyutility
  ☆22Updated 11 years ago
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated 2 years ago
• kwongj / maskrc-svg
  Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG
  ☆20Updated 6 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆28Updated last year
• SamiLhll / macrosyntR
  R package for comparison of synteny conservation at the genome-wide scale.
  ☆14Updated 11 months ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• simonwhelan / prequal
  PREQUAL: a pre-alignment quality filter for comparative sequence analyses
  ☆31Updated 2 years ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆55Updated last month
• at-cg / RAFT
  ☆23Updated 8 months ago
• gengit / PosiGene
  ☆26Updated 4 years ago
• BenoitMorel / AleRax
  Gene tree - species tree reconciliation from gene tree distributions
  ☆27Updated this week
• laxeye / zga
  ZGA prokaryotic genome assembly and annotation pipeline
  ☆12Updated 8 months ago
• h836472 / ContScout
  ContScout sequence contamination filter tool
  ☆20Updated 4 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated 3 months ago
• Sudaraka88 / LDWeaver
  Genomewide Epistasis Analysis on Bacteria
  ☆14Updated this week
• rrwick / Core-SNP-filter
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆59Updated 2 months ago
• TurakhiaLab / ROADIES
  Tool for fully-automated inference of species trees from raw genome assemblies
  ☆32Updated last week
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆31Updated 5 months ago
• TimothyStephens / Dinoflagellate_Annotation_Workflow
  Dinoflagellate Annotation Workflow
  ☆14Updated 2 years ago
• mathjeff / Mapper
  Genomic sequence aligner
  ☆23Updated this week
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 3 weeks ago
• rrwick / Compare-annotations
  A script for comparing old vs new versions of genome annotations
  ☆20Updated last year
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆31Updated last year
• slimsuite / buscomp
  BUSCOMP: BUSCO Compiler and Comparison tool
  ☆21Updated 7 months ago
• balabanmetin / uDance
  ☆43Updated last year