legumeinfo / pandagmaLinks
Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
☆20Updated 2 weeks ago
Alternatives and similar repositories for pandagma
Users that are interested in pandagma are comparing it to the libraries listed below
Sorting:
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- Consensus genome annotation using OMA☆31Updated this week
- ☆29Updated 3 years ago
- Identification of conserved non-coding sequences in plants☆31Updated 3 months ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Genome alignment and synteny plots☆33Updated 2 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Updated 7 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- Domain based annotation of transposable elements☆21Updated 3 months ago
- SINE annotation tool for plant genomes☆18Updated last year
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆24Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Construct and Analyze the North American Vitis pangenome☆29Updated 5 months ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Updated 8 months ago
- ☆44Updated last year
- plot genome alignment synteny☆21Updated 5 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated 2 months ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 6 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- ☆21Updated last year
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆17Updated 11 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- ☆31Updated 9 months ago