legumeinfo / pandagmaLinks
Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
☆17Updated this week
Alternatives and similar repositories for pandagma
Users that are interested in pandagma are comparing it to the libraries listed below
Sorting:
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- ☆15Updated 3 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- SINE annotation tool for plant genomes☆17Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Gene Family Annotation Workflow☆11Updated last year
- Yet another Hi-C scaffolding tool☆19Updated 7 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 2 months ago
- ☆27Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 2 months ago
- ☆20Updated 9 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Identification of conserved non-coding sequences in plants☆17Updated last month
- plot genome alignment synteny☆21Updated 5 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Consensus genome annotation using OMA☆24Updated last month
- Script to help assessing the evolutionary history of a TE family☆16Updated 5 years ago
- The tools are used for displaying hic signal of genome☆23Updated 4 years ago
- ☆25Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆16Updated 2 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- ☆16Updated 5 months ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 5 months ago
- A long-read SV calling pipeline☆12Updated 3 years ago
- chloroplast genome assembly using long reads data☆12Updated 2 years ago