legumeinfo / pandagmaLinks
Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
☆17Updated 3 weeks ago
Alternatives and similar repositories for pandagma
Users that are interested in pandagma are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Identification of conserved non-coding sequences in plants☆20Updated last month
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆13Updated 5 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated this week
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- ☆20Updated 10 months ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Domain based annotation of transposable elements☆19Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆26Updated 3 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- Genome alignment and synteny plots☆30Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- plot genome alignment synteny☆21Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- ☆16Updated 6 months ago
- SINE annotation tool for plant genomes☆17Updated last year
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- ☆28Updated 2 years ago
- An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction☆19Updated last year
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- ☆16Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 years ago
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆13Updated last month
- A Hi-C scaffolding method☆23Updated 3 years ago