Alternatives and similar repositories for AGHmatrix

Users that are interested in AGHmatrix are comparing it to the libraries listed below

• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆31Updated 11 months ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆22Updated 7 months ago
• jendelman / diaQTL
  QTL analysis in diallel populations
  ☆12Updated 2 months ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆38Updated 2 years ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated last year
• bodkan / admixr
  An R interface for the ADMIXTOOLS software
  ☆34Updated 2 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆72Updated 4 months ago
• cran / sommer
   This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…
  ☆16Updated 2 months ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆24Updated last year
• jendelman / StageWise
  two-stage analysis of multi-environment trials for genomic selection and GWAS
  ☆28Updated last month
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆43Updated 6 months ago
• perpdgo / lme4GS
  lme4 for Genomic Selection
  ☆18Updated 2 weeks ago
• bodkan / demografr
  A framework for simulation-based inference in evolutionary biology
  ☆28Updated 3 weeks ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated 5 months ago
• hemstrow / snpR
  ☆31Updated last week
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆29Updated 7 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated last week
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 3 years ago
• rramadeu / AGHmatrix
  An R package to compute relationship matrices for diploid and autopolyploid species
  ☆11Updated last month
• frahik / BMTME
  Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]
  ☆19Updated 2 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆39Updated 2 years ago
• ANGSD / NgsRelate
  ☆46Updated 10 months ago
• dyerlab / applied_population_genetics
  A textbook on population genetics
  ☆18Updated last month
• nicocriscuolo / StructuRly
  Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
  ☆23Updated last year
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆151Updated last month
• MarcooLopez / Genomic-Selection
  ☆27Updated 5 years ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for performing and teaching population genomic analyses
  ☆19Updated 2 weeks ago
• emmanuelparadis / psmcr
  R Port of psmc
  ☆17Updated 2 years ago
• bodkan / slendr
  Population genetic simulations in R
  ☆63Updated last week
• samuelbfernandes / simplePHENOTYPES
  Simulation of Pleiotropic, Linked and Epistatic Phenotypes
  ☆13Updated 4 months ago