Alternatives and similar repositories for AGHmatrix

Users that are interested in AGHmatrix are comparing it to the libraries listed below

• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆30Updated 2 months ago
• perpdgo / lme4GS
  lme4 for Genomic Selection
  ☆17Updated 4 years ago
• samuelbfernandes / simplePHENOTYPES
  Simulation of Pleiotropic, Linked and Epistatic Phenotypes
  ☆13Updated last year
• jendelman / polyBreedR
  Using genome-wide markers for polyploid breeding
  ☆11Updated 4 months ago
• covaruber / sommer
  ☆47Updated 3 weeks ago
• jendelman / StageWise
  two-stage analysis of multi-environment trials for genomic selection and GWAS
  ☆26Updated 2 months ago
• cran / sommer
   This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…
  ☆16Updated last month
• jgx65 / hierfstat
  the hierfstat package
  ☆24Updated 5 months ago
• MarcooLopez / Genomic-Selection
  ☆24Updated 4 years ago
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆20Updated 10 months ago
• PlantandFoodResearch / MCHap
  Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
  ☆19Updated 7 months ago
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated 5 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆70Updated last year
• Rpedigree / pedigreeTools
  R functions related to pedigrees
  ☆11Updated 10 months ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆30Updated 2 months ago
• whussain2 / Analysis-pipeline
  ☆34Updated 3 years ago
• TiagoOlivoto / metan
  Package for multi-environment trial analysis
  ☆34Updated 7 months ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated last year
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆40Updated 7 months ago
• frahik / BMTME
  Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]
  ☆17Updated last year
• gaynorr / AlphaSimR
  R package for breeding program simulations
  ☆48Updated last month
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆53Updated 4 years ago
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 7 months ago
• mighster / BLUPs_Heritability
  ☆16Updated 5 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• maize-genetics / rTASSEL
  R front-end for TASSEL 5
  ☆31Updated 3 weeks ago
• jendelman / diaQTL
  QTL analysis in diallel populations
  ☆12Updated last year
• hemstrow / snpR
  ☆30Updated 3 weeks ago
• MrodesBook / Examples_R
  ☆24Updated last year
• QuantGen / MTM
  Multivariate Gaussian Models for Genomic and Pedigree Data
  ☆12Updated 4 years ago