PlantandFoodResearch / MCHap
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
☆18Updated this week
Related projects: ⓘ
- GWAS software that can handle autopolyploids☆26Updated 6 months ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆35Updated 8 months ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆26Updated 9 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆52Updated last week
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆37Updated 5 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆47Updated last month
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆24Updated 3 months ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆29Updated 4 months ago
- ☆40Updated 9 months ago
- An R package to detect selection in biological pathways☆14Updated 8 months ago
- microhaplotype visualizer and analyzer☆18Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆38Updated 4 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Fast inference of fine-scale recombination rates based on fused-LASSO☆42Updated 3 months ago
- Genetic maps in autopolyploids☆23Updated 6 months ago
- ☆26Updated 3 weeks ago
- ☆19Updated 4 years ago
- ☆10Updated 4 years ago
- Method for dating admixture in ancient DNA specimens☆26Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆26Updated 6 months ago
- Module for analysing admixture graphs☆28Updated 6 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆23Updated 6 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆54Updated 6 years ago
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- Code and binaries related to processing haplotagging data☆13Updated 2 years ago
- method for modeling continuous and discrete population genetic structure☆35Updated 8 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆28Updated 5 months ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆22Updated 2 years ago