Alternatives and similar repositories for updog:

Users that are interested in updog are comparing it to the libraries listed below

• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆29Updated last month
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆35Updated last month
• jendelman / GWASpoly
  GWAS software that can handle autopolyploids
  ☆28Updated 6 months ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆25Updated 4 months ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆33Updated last year
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated last month
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• ListerLab / TEPID
  Transposable element polymorphism identification
  ☆33Updated 4 years ago
• johnssproul / RepeatProfiler
  ☆25Updated 2 months ago
• hemstrow / snpR
  ☆30Updated last week
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆24Updated last year
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆58Updated 5 months ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆30Updated 3 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated 2 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• z0on / 2bRAD_denovo
  Genome-wide de novo genotyping with 2bRAD
  ☆22Updated 6 months ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• caulilin / QTG_Seq
  ☆21Updated 6 years ago
• StevenMicheletti / poolparty
  Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R
  ☆20Updated 3 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• liu3zhenlab / homotools
  ☆27Updated 4 months ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆21Updated 4 months ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆36Updated 11 months ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆42Updated 2 weeks ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆28Updated 3 years ago
• oushujun / MTEC
  A repo contains historical and updated MTEC libraries.
  ☆17Updated 5 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago