dcgerard / updog
Flexible Genotyping of Polyploids using Next Generation Sequencing Data
☆24Updated 2 months ago
Related projects: ⓘ
- Genetic maps in autopolyploids☆23Updated 6 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆38Updated 4 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆28Updated 5 months ago
- A (very) simple script to QC Hi-C data.☆24Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆25Updated 5 months ago
- Likelihood-based Selective Sweep Detection☆35Updated 11 months ago
- A haplotype analysis toolkit for natural variation study.☆27Updated 11 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- Code and binaries related to processing haplotagging data☆13Updated 2 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆32Updated 3 weeks ago
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- ☆18Updated 5 months ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Perform GWAS with gemma in a simple pipeline☆24Updated 2 years ago
- ☆24Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆27Updated 2 years ago
- ☆20Updated 5 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆27Updated 3 months ago
- Scripts to convert between file formats for various analyses☆14Updated last month
- Make Pseudo-Reference Genome from VCF/BCF☆13Updated 3 years ago
- read and analyse RepeatMasker output☆23Updated last year
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 5 months ago
- Transposable Elements MOvement detection using LOng reads☆18Updated last month
- Evolutionary Transcriptomics with R☆38Updated last month
- ☆19Updated 4 years ago
- ☆26Updated 3 weeks ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆11Updated 5 years ago
- Haplotype and population structure inference using neural networks.☆24Updated last month