jendelman / GWASpoly
GWAS software that can handle autopolyploids
☆28Updated 5 months ago
Alternatives and similar repositories for GWASpoly:
Users that are interested in GWASpoly are comparing it to the libraries listed below
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆28Updated 4 months ago
- ☆30Updated 2 weeks ago
- Genetic maps in autopolyploids☆28Updated 2 weeks ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 3 weeks ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated 3 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆49Updated last month
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆37Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆57Updated 4 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated 3 months ago
- Assessing confidence in introgression among four populations☆27Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Repository for speciation genomics website☆24Updated 8 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆26Updated 7 months ago
- ☆43Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆38Updated 11 months ago
- Methods for examining PCA locally along the genome.☆77Updated 7 months ago
- Genome-wide scan for balancing selection using beta statistic☆28Updated last year
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Evolutionary Transcriptomics with R☆42Updated last week
- Software for estimating genome-wide genealogies for thousands of samples☆30Updated 5 months ago
- Perform GWAS using the FarmCPU model.☆23Updated 3 months ago
- R package for pedigree inference based on SNP data☆26Updated 9 months ago
- Integrate multiple genome assemblies into a pangenome graph☆33Updated 2 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆33Updated 10 months ago