GWAS software that can handle autopolyploids
☆36Oct 14, 2025Updated 10 months ago
Alternatives and similar repositories for GWASpoly
Users that are interested in GWASpoly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QTL analysis in diallel populations☆13Mar 13, 2026Updated 5 months ago
- Using genome-wide markers for polyploid breeding☆14May 2, 2026Updated 3 months ago
- Genetic maps in autopolyploids☆33Jan 12, 2026Updated 7 months ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 9 months ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆33Mar 17, 2026Updated 5 months ago
- two-stage analysis of multi-environment trials for genomic selection and GWAS☆32Updated this week
- PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of…☆14Apr 13, 2021Updated 5 years ago
- ☆29Jul 16, 2022Updated 4 years ago
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Jul 22, 2026Updated last month
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 5 months ago
- PPL (Pore-C PipLine) is a set of tools to process, evaluate and visualize the multi-way contacts experiment based on 3C and ONT long read…☆16Apr 22, 2025Updated last year
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- New version of mpMap☆12Jul 19, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆48Sep 22, 2025Updated 11 months ago
- QTL mapping in outcrossing species using CIM☆10Feb 5, 2026Updated 6 months ago
- A library for running k-mers based GWAS☆129Oct 29, 2024Updated last year
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated 10 months ago
- a software for annotating plant genes☆24Dec 22, 2023Updated 2 years ago
- Example data for R/qtl2☆13May 29, 2026Updated 3 months ago
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated last month
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated 2 years ago
- Scripts for NGS processing☆16Sep 6, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆27Jun 27, 2026Updated 2 months ago
- Ploidy agnostic phasing pipeline and algorithm☆50Jan 3, 2024Updated 2 years ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- ☆10Jan 27, 2025Updated last year
- ☆14Nov 29, 2025Updated 9 months ago
- QTL analysis software for high-dimensional data and complex cross designs☆40Jul 22, 2026Updated last month
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆40Dec 27, 2023Updated 2 years ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- Polyploid-aware, multiscale super-pangenome graph strategy☆21Oct 29, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆23May 6, 2026Updated 3 months ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated 2 years ago
- General purpose utility related to GAF files☆37Aug 6, 2026Updated 3 weeks ago
- 上科大刘雪松课题组基因组学分析传承与分享知识库☆15Feb 21, 2020Updated 6 years ago
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆21Jul 10, 2024Updated 2 years ago
- A haplotype-resolved and telomere-to-telomere genome assembly pipeline (PHap) tailored for autopolyploids, relying solely on common seque…☆30Jul 29, 2025Updated last year