Alternatives and similar repositories for GWASpoly

Users that are interested in GWASpoly are comparing it to the libraries listed below

• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 6 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆31Updated 5 months ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆55Updated 4 months ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 7 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆68Updated 3 weeks ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆30Updated last month
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆49Updated 5 months ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆62Updated 7 years ago
• jingwanglab / Populus_genomic_prediction_climate_vulnerability
  ☆42Updated 3 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆49Updated 3 months ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆46Updated 5 months ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆59Updated last month
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆28Updated 6 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆31Updated 11 months ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆41Updated last year
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆26Updated 11 months ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆27Updated 6 months ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated 10 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆47Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆28Updated 5 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated last week
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 4 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated 2 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆32Updated last month
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated 2 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆44Updated last year