Alternatives and similar repositories for GWASpoly

Users that are interested in GWASpoly are comparing it to the libraries listed below

• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆29Updated 8 months ago
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆29Updated last month
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated 2 months ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆37Updated 3 months ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 4 months ago
• hemstrow / snpR
  ☆30Updated 3 weeks ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated last month
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆63Updated this week
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆81Updated 10 months ago
• ANGSD / NgsRelate
  ☆43Updated 3 months ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆23Updated 2 weeks ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆38Updated last year
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆39Updated 4 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆20Updated 2 weeks ago
• bcm-uga / lfmm
  Fitting latent factor mixed models
  ☆13Updated 5 years ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 6 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆20Updated 5 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆29Updated 3 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• GoreLab / Sorghum-HapMap
  Hapmap-v1
  ☆12Updated 5 years ago