jendelman / GWASpolyLinks
GWAS software that can handle autopolyploids
☆31Updated 2 months ago
Alternatives and similar repositories for GWASpoly
Users that are interested in GWASpoly are comparing it to the libraries listed below
Sorting:
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 2 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- Genetic maps in autopolyploids☆31Updated last week
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆39Updated 9 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆57Updated 6 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆31Updated 3 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Assessing confidence in introgression among four populations☆28Updated 4 years ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- ☆54Updated 6 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆45Updated last year
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆51Updated 4 months ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- A haplotype analysis toolkit for natural variation study.☆31Updated 2 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 5 months ago