GWAS software that can handle autopolyploids
☆33Oct 14, 2025Updated 5 months ago
Alternatives and similar repositories for GWASpoly
Users that are interested in GWASpoly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QTL analysis in diallel populations☆12Mar 13, 2026Updated 3 weeks ago
- Using genome-wide markers for polyploid breeding☆12Updated this week
- Genetic maps in autopolyploids☆31Jan 12, 2026Updated 3 months ago
- SNP genotyping in polyploids☆16Aug 12, 2020Updated 5 years ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 2 weeks ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆31Mar 17, 2026Updated 3 weeks ago
- two-stage analysis of multi-environment trials for genomic selection and GWAS☆29Mar 7, 2026Updated last month
- ☆29Jul 16, 2022Updated 3 years ago
- PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of…☆14Apr 13, 2021Updated 4 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Dec 12, 2025Updated 3 months ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- A library for running k-mers based GWAS☆125Oct 29, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes☆46Sep 22, 2025Updated 6 months ago
- a software for annotating plant genes☆23Dec 22, 2023Updated 2 years ago
- ☆26Apr 22, 2025Updated 11 months ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- Dynamic Elongation of a Genome Assembly Path☆25Feb 25, 2026Updated last month
- Scripts for NGS processing☆16Sep 6, 2017Updated 8 years ago
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Aug 1, 2025Updated 8 months ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- ☆10Jan 27, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 9 months ago
- QTL mapping in outcrossing species using CIM☆10Feb 5, 2026Updated 2 months ago
- ☆14Nov 29, 2025Updated 4 months ago
- QTL analysis software for high-dimensional data and complex cross designs☆38Apr 4, 2026Updated last week
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- General purpose utility related to GAF files☆29Apr 2, 2026Updated last week
- repository for code used in analysis of open wild wheat consortium☆18Nov 23, 2021Updated 4 years ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- Read-pair simulation of 3C-based sequencing methodologies (HiC, Meta3C, DNase-HiC)☆20Jul 10, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- 上科大刘雪松课题组基因组学分析传承与分享知识库☆14Feb 21, 2020Updated 6 years ago
- Genome annotation pre-publication results☆26Mar 26, 2026Updated 2 weeks ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated last year
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆40Dec 27, 2023Updated 2 years ago
- Simulation of Pleiotropic, Linked and Epistatic Phenotypes☆15Sep 18, 2025Updated 6 months ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 10 months ago
- Application of pan-genome for population☆117Oct 26, 2025Updated 5 months ago