jendelman / GWASpoly

Related projects: ⓘ

• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆52Updated last week
• dcgerard / updog
  Flexible Genotyping of Polyploids using Next Generation Sequencing Data
  ☆24Updated 2 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆38Updated 4 years ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆28Updated 5 months ago
• hemstrow / snpR
  ☆26Updated 3 weeks ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆29Updated last year
• mmollina / MAPpoly
  Genetic maps in autopolyploids
  ☆23Updated 6 months ago
• ANGSD / NgsRelate
  ☆40Updated 9 months ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆23Updated 6 years ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆22Updated 6 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated last year
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆35Updated 8 months ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆32Updated 3 weeks ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆25Updated 3 months ago
• guilherme-pereira / QTLpoly
  R package for random-effect multiple QTL mapping in autopolyploids
  ☆9Updated 2 years ago
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆27Updated 11 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆69Updated last month
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆18Updated 3 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆29Updated 5 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 2 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆31Updated 9 months ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆47Updated last month
• jendelman / StageWise
  two-stage analysis of multi-environment trials for genomic selection and GWAS
  ☆18Updated last month
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆22Updated 2 years ago
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆29Updated 4 months ago
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆24Updated last year
• whussain2 / Analysis-pipeline
  ☆32Updated 2 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆54Updated 6 years ago