jendelman / GWASpolyLinks
GWAS software that can handle autopolyploids
☆28Updated 9 months ago
Alternatives and similar repositories for GWASpoly
Users that are interested in GWASpoly are comparing it to the libraries listed below
Sorting:
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated this week
- R-package: Calculation of haplotype blocks and libraries☆31Updated 4 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 8 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Methods for examining PCA locally along the genome.☆82Updated 11 months ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆49Updated 4 months ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 5 years ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 3 months ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 3 months ago
- ☆43Updated 3 months ago
- ☆30Updated last month
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆37Updated last year
- Tools and Utilities for msmc and msmc2☆48Updated last year
- Estimate recombination rates from population genetic data☆67Updated 5 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆35Updated last year
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆60Updated 8 months ago
- Perform GWAS with gemma in a simple pipeline☆26Updated 2 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Genome Annotation Without Nightmares☆46Updated 5 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year