Alternatives and similar repositories for AGHmatrix

Users that are interested in AGHmatrix are comparing it to the libraries listed below

• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆30Updated 8 months ago
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆43Updated last month
• Rpedigree / pedigreeTools
  R functions related to pedigrees
  ☆14Updated 2 months ago
• jendelman / diaQTL
  QTL analysis in diallel populations
  ☆12Updated last year
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆28Updated 3 months ago
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆16Updated 7 years ago
• bodkan / demografr
  Fast and simple simulation-based population genetic inference in R
  ☆26Updated last week
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆37Updated last year
• cooplab / Popgen_teaching_code
  ☆56Updated 3 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated last year
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆61Updated last week
• statgenlmu / coala
  A Framework for Coalescent Simulation in R
  ☆23Updated last year
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated 2 months ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for performing and teaching population genomic analyses
  ☆19Updated 2 months ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆27Updated 5 years ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated last year
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 5 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆66Updated 2 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆24Updated 11 months ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 8 months ago
• hemstrow / snpR
  ☆31Updated 2 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆43Updated 4 months ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆12Updated 5 years ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆72Updated 2 months ago
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆37Updated 5 months ago
• cran / sommer
   This is a read-only mirror of the CRAN R package repository. sommer — Solving Mixed Model Equations in R. Homepage: https://github.com/…
  ☆16Updated 4 months ago
• sa-lee / starmie
  starmie: plotting and inference for population structure models
  ☆14Updated 7 years ago
• bodkan / admixr
  An R interface for the ADMIXTOOLS software
  ☆34Updated this week