Alternatives and similar repositories for AGHmatrix

Users that are interested in AGHmatrix are comparing it to the libraries listed below

• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆31Updated 9 months ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for performing and teaching population genomic analyses
  ☆19Updated 3 months ago
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• jendelman / diaQTL
  QTL analysis in diallel populations
  ☆12Updated 2 weeks ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆27Updated 5 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆21Updated last year
• vsbuffalo / msr
  Process MS results in R, in a tidy way
  ☆16Updated 7 years ago
• cooplab / Popgen_teaching_code
  ☆56Updated 3 years ago
• statgenlmu / coala
  A Framework for Coalescent Simulation in R
  ☆23Updated last year
• Rpedigree / pedigreeTools
  R functions related to pedigrees
  ☆14Updated 2 months ago
• emmanuelparadis / ape
  Analysis of Phylogenetics and Evolution
  ☆73Updated 6 months ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆28Updated 4 months ago
• thierrygosselin / radiator
  RADseq Data Exploration, Manipulation and Visualization using R
  ☆59Updated 3 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆37Updated 6 months ago
• grunwaldlab / poppr
  🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
  ☆72Updated 3 months ago
• jgx65 / hierfstat
  the hierfstat package
  ☆25Updated last year
• reptalex / phylofactor
  ☆28Updated last year
• bodkan / slendr
  Population genetic simulations in R
  ☆61Updated this week
• hemstrow / snpR
  ☆31Updated this week
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated last week
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆43Updated last month
• markrobinsonuzh / TreeSummarizedExperiment
  An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension
  ☆14Updated 4 months ago
• merlebehr / treeSeg
  Implementation of the treeSeg algorithm as an R package.
  ☆14Updated 3 years ago
• augusto-garcia / fullsibQTL
  QTL mapping in outcrossing species using CIM
  ☆10Updated last year
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆27Updated 6 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆29Updated 7 months ago
• cheuerde / cpgen
  Parallel Genomic evaluations in R
  ☆16Updated last year
• bcbc-group / CyVerese_SNP_calling_webinar
  ☆10Updated 5 years ago
• NovembreLab / PCAviz
  An R package to help in plotting PCA results nicely.
  ☆12Updated 5 years ago