rramadeu / AGHmatrixView external linksLinks
An R package to compute relationship matrices for diploid and autopolyploid species
☆11Dec 12, 2025Updated 2 months ago
Alternatives and similar repositories for AGHmatrix
Users that are interested in AGHmatrix are comparing it to the libraries listed below
Sorting:
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆31Mar 8, 2025Updated 11 months ago
- QTL analysis in diallel populations☆12Dec 2, 2025Updated 2 months ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 4 years ago
- Stochastic-Lanczos-Expedited Mixed Models☆10Dec 10, 2025Updated 2 months ago
- Genetic maps in autopolyploids☆31Jan 12, 2026Updated last month
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 2 months ago
- A tutorial of the BLUPF90 family programs☆27Apr 28, 2025Updated 9 months ago
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆23Sep 4, 2024Updated last year
- R package for breeding program simulations☆60Jan 15, 2026Updated 3 weeks ago
- CRAN Task View: Agricultural Science☆32Feb 3, 2026Updated last week
- R package for pedigree inference based on SNP data☆28Jan 4, 2026Updated last month
- GWAS software that can handle autopolyploids☆32Oct 14, 2025Updated 3 months ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆31Feb 3, 2026Updated last week
- Differential evolution in R☆30Nov 9, 2022Updated 3 years ago
- Exact Hamiltonian Monte Carlo Sampler for Truncated Multivariate Gaussians☆12Feb 11, 2020Updated 6 years ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 3 weeks ago
- Repository☆10Oct 23, 2024Updated last year
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆39Dec 27, 2023Updated 2 years ago
- Python package designed for single-cell calling cards data☆16Jun 8, 2025Updated 8 months ago
- A tool to extract and annotate genes from raw RNA-seq reads.☆10Dec 20, 2024Updated last year
- ☆13May 27, 2025Updated 8 months ago
- 'pkill -f' with a confirmation prompt.☆14Mar 26, 2020Updated 5 years ago
- This pipeline is used to distinguish allotetraploid subgenomes.☆11Apr 8, 2024Updated last year
- ☆12Feb 16, 2025Updated 11 months ago
- AlphaImpute2: pedigree- and population-based genotype imputation☆12Dec 19, 2025Updated last month
- A package for reading ABF (binary format used by Axon pCLAMP)☆10Jul 21, 2020Updated 5 years ago
- A Python package for landscape genomic simulation☆12Dec 15, 2025Updated last month
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated 11 months ago
- Analysis tools for SLEAP-based plant root phenotyping.☆13Updated this week
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆17Sep 23, 2025Updated 4 months ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 2 months ago
- ☆24Jan 29, 2026Updated 2 weeks ago
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 5 years ago
- consensus approach for community profiling with nanopore amplicon sequencing data☆15Sep 30, 2024Updated last year
- Using genome-wide markers for polyploid breeding☆12Dec 25, 2025Updated last month
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆11Nov 14, 2024Updated last year
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Jun 10, 2022Updated 3 years ago