dePamphilis / PlantTribesLinks
PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
☆35Updated 2 years ago
Alternatives and similar repositories for PlantTribes
Users that are interested in PlantTribes are comparing it to the libraries listed below
Sorting:
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆49Updated last year
- Genome Annotation Pipeline☆36Updated 10 months ago
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated last month
- Neural network classification of TE☆90Updated last month
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆100Updated this week
- ☆74Updated this week
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆37Updated this week
- ☆44Updated 8 years ago
- paml documentation and tutorials☆60Updated last month
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆63Updated 6 months ago
- ☆32Updated 4 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆31Updated 6 months ago
- ☆77Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- Scripting analyses of genomes in Ensembl Plants☆40Updated last month
- A tool for evaluate long-read de novo assembly results☆48Updated 10 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 9 months ago
- ☆9Updated 9 years ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- ☆63Updated last week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- ☆41Updated 2 years ago
- Synteny Imager☆63Updated 10 months ago
- ☆9Updated 4 years ago