dePamphilis / PlantTribes
PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
☆34Updated last year
Related projects ⓘ
Alternatives and complementary repositories for PlantTribes
- A shiny application to visualize MCscan result☆33Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆41Updated 6 months ago
- paml documentation and tutorials☆45Updated last year
- ☆42Updated 7 years ago
- Genome Annotation Pipeline☆32Updated 2 months ago
- High-precision TE Annotator☆58Updated this week
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Updated 3 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆40Updated 9 months ago
- ☆69Updated last month
- scripts for the project of seven thaliana genomes assembly☆37Updated 3 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆51Updated 2 weeks ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆36Updated 4 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- Neural network classification of TE☆83Updated 2 years ago
- An efficient assembly tool for plant mitochondrial genome☆28Updated 5 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆63Updated 3 years ago
- A novel genome assembly pipeline based on deep learning☆51Updated last month
- A program to call variants from genome alignment☆76Updated 7 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago
- Scripting analyses of genomes in Ensembl Plants☆37Updated last week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆50Updated last year
- ☆32Updated 3 years ago
- Resistify is a command line program that identifies and classifies NLRs from protein sequences☆26Updated this week
- A organelle de novo genome assembly toolkit☆43Updated last week
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated last month
- STAG: Species Tree from All Genes☆31Updated 5 years ago
- Synteny Imager☆60Updated 2 months ago