Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses
☆40Dec 27, 2023Updated 2 years ago
Alternatives and similar repositories for onemap
Users that are interested in onemap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QTL analysis in diallel populations☆13Mar 13, 2026Updated 7 months ago
- Genetic maps in autopolyploids☆33Jan 12, 2026Updated 9 months ago
- QTL mapping in outcrossing species using CIM☆10Feb 5, 2026Updated 8 months ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 11 months ago
- ☆23Jan 11, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code to compute the XP-CLR statistic to infer natural selection☆108Jun 13, 2022Updated 4 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 6 months ago
- New version of mpMap☆12Jul 19, 2020Updated 6 years ago
- Example data for R/qtl2☆13May 29, 2026Updated 4 months ago
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Sep 30, 2026Updated 2 weeks ago
- An application to compare genetic maps with D3 & Shiny☆22Feb 28, 2023Updated 3 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆33Mar 17, 2026Updated 7 months ago
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 6 months ago
- SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.☆39Apr 5, 2019Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Illumina read substitution and indel error corrector. Processes human WGS 45x depth reads in about 4 hours, resulting in the reads qualit…☆10Sep 17, 2026Updated last month
- VCF-kit: Assorted utilities for the variant call format☆135May 22, 2026Updated 4 months ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆24May 19, 2026Updated 4 months ago
- Super high performance interactive heatmap software☆32Nov 19, 2018Updated 7 years ago
- PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of…☆14Apr 13, 2021Updated 5 years ago
- Contig Ploidy and Allele Dosage Estimation☆12Oct 30, 2015Updated 10 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆211Jul 16, 2026Updated 3 months ago
- DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.☆24May 15, 2026Updated 5 months ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method☆36Jul 15, 2026Updated 3 months ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- QTL analysis software for high-dimensional data and complex cross designs☆40Jul 22, 2026Updated 2 months ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 6 years ago
- Galaxy Wrappers and helpers for the MISA ttols☆11Oct 11, 2014Updated 12 years ago
- ☆36Jun 24, 2026Updated 3 months ago
- Ploidy agnostic phasing pipeline and algorithm☆51Jan 3, 2024Updated 2 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 4 years ago
- Genetic Map Comparison☆20Nov 10, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆230Jul 5, 2025Updated last year
- A tool to root phylogenies☆24Sep 5, 2024Updated 2 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- a broadly applicable tool for automated gene identification and retrieval☆42Jun 16, 2026Updated 4 months ago
- ☆30Oct 14, 2022Updated 4 years ago
- ☆12Feb 16, 2025Updated last year