Visualising discordant reads
☆15Sep 2, 2015Updated 10 years ago
Alternatives and similar repositories for DiscoPlot
Users that are interested in DiscoPlot are comparing it to the libraries listed below
Sorting:
- A genome-scale, fast, and precise segmental duplications mapping tool☆35Sep 11, 2024Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Aug 20, 2020Updated 5 years ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Genome alignment and synteny plots☆33Jun 5, 2023Updated 2 years ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Oct 25, 2023Updated 2 years ago
- The complete sequence of a Chinese individual☆11Oct 8, 2024Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- tandem repeat finding from erroneous long reads☆15Aug 4, 2025Updated 7 months ago
- Daily usage script recording☆12Jan 17, 2026Updated 2 months ago
- Sync paired-end FASTA/Q files and keep singleton reads☆18Nov 26, 2025Updated 3 months ago
- Convergent substitution detection tool based on the PCOC model☆31Dec 2, 2021Updated 4 years ago
- Segmental duplication detection tool☆16Feb 7, 2023Updated 3 years ago
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Mar 18, 2022Updated 4 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- SEEKIN: SEquence-based Estimation of KINship☆14Oct 11, 2017Updated 8 years ago
- R package to draw syntenic plots in 3 different styles☆45Feb 2, 2026Updated last month
- ☆24Apr 22, 2025Updated 10 months ago
- ☆16Feb 26, 2026Updated 3 weeks ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆32Sep 11, 2025Updated 6 months ago
- An easy-to-use python package can be used for genomic visual analysis☆21Apr 20, 2024Updated last year
- Step by step tutorial for CAGE analysis☆10Sep 18, 2025Updated 6 months ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆65Sep 30, 2022Updated 3 years ago
- GenomeTools genome analysis system.☆335Nov 10, 2025Updated 4 months ago
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- Algorithm to detect germline and de novo transposon insertions☆34Aug 14, 2025Updated 7 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Jun 27, 2020Updated 5 years ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 4 years ago
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Apr 14, 2019Updated 6 years ago
- oxford dot plots☆166Feb 17, 2026Updated last month