Alternatives and similar repositories for Contiguity

Users that are interested in Contiguity are comparing it to the libraries listed below

• institut-de-genomique / NaS
  NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…
  ☆15Updated 8 years ago
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 5 years ago
• mjsull / DiscoPlot
  Visualising discordant reads
  ☆15Updated 9 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• laurentnoe / yass
  genomic alignment similarity search tool
  ☆18Updated 11 months ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• mfiers / hagfish
  Hagfish - assess an assembly through creative use of coverage plots
  ☆36Updated 12 years ago
• KorfLab / CEGMA_v2
  The final version 2 release of our software to detect core genes in eukaryotic genomes
  ☆28Updated 10 years ago
• CSB5 / INC-Seq
  INC-Seq: Accurate single molecule reads using nanopore sequencing
  ☆15Updated 4 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 9 years ago
• jessiewu / bacterialGWAS
  A pipeline for performing genome-wide association tests for bacterial genomes.
  ☆27Updated 7 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago
• brwnj / idplot
  compare sequences to a shared root reference sequence.
  ☆24Updated 3 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• kwongj / roary2fripan
  Formats Roary output for viewing in FriPan
  ☆11Updated 6 years ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• marbl / VALET
  A pipeline for detecting mis-assemblies in metagenomic assemblies.
  ☆14Updated 7 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• kstatebioinfo / Irys-scaffolding
  scripts to parse IrysView output
  ☆11Updated 9 years ago
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated last year
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆60Updated 4 years ago
• ktrappe / daisy
  Horizontal Gene Transfer Detection by Mapping Sequencing Reads
  ☆21Updated 7 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 4 years ago
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago
• nickloman / nanopore-basecalling-scripts
  Some simple scripts to ease management and local basecalling of millions of FAST5 files
  ☆25Updated 7 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆55Updated last year
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated 7 years ago