mjsull / ContiguityLinks
Tool for visualising assemblies.
☆17Updated 10 years ago
Alternatives and similar repositories for Contiguity
Users that are interested in Contiguity are comparing it to the libraries listed below
Sorting:
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- genomic alignment similarity search tool☆18Updated 6 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- scripts to parse IrysView output☆11Updated 10 years ago
- Visualising discordant reads☆15Updated 10 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated 2 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Updated last year
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- ☆12Updated 8 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 8 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆31Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- ☆26Updated 7 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 9 years ago
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated 2 months ago
- ☆21Updated 6 years ago