mjsull / ContiguityLinks
Tool for visualising assemblies.
☆17Updated 10 years ago
Alternatives and similar repositories for Contiguity
Users that are interested in Contiguity are comparing it to the libraries listed below
Sorting:
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- genomic alignment similarity search tool☆18Updated 5 months ago
- scripts to parse IrysView output☆11Updated 10 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Haplotype-aware genome assembly toolkit☆30Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Updated 13 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated last month
- A tool for recovering synteny blocks from multiple alignment☆31Updated 4 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 7 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- ☆12Updated 7 months ago