mjsull / Contiguity
Tool for visualising assemblies.
☆17Updated 9 years ago
Alternatives and similar repositories for Contiguity:
Users that are interested in Contiguity are comparing it to the libraries listed below
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- genomic alignment similarity search tool☆19Updated 9 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Formats Roary output for viewing in FriPan☆11Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 11 months ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆26Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Updated 2 years ago
- Visualising discordant reads☆15Updated 9 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆41Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- ☆26Updated 5 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago