mjsull / ContiguityLinks
Tool for visualising assemblies.
☆17Updated 9 years ago
Alternatives and similar repositories for Contiguity
Users that are interested in Contiguity are comparing it to the libraries listed below
Sorting:
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- genomic alignment similarity search tool☆18Updated 3 weeks ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆26Updated 6 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- ☆21Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Visualising discordant reads☆15Updated 9 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Formats Roary output for viewing in FriPan☆11Updated 7 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Updated 2 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆28Updated last month
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago