Alternatives and similar repositories for MITE-Tracker:

Users that are interested in MITE-Tracker are comparing it to the libraries listed below

• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 7 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• ShiuLab / PseudogenePipeline
  ☆39Updated last year
• baozg / phased-assembly-check
  ☆29Updated 2 months ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆42Updated last year
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated last month
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated 10 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆29Updated last year
• JM-SONG / GenomeSyn
  ☆23Updated 3 years ago
• jkimlab / DESCHRAMBLER
  ☆22Updated last year
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆38Updated 6 months ago
• i10labtitech / GINGER
  ☆27Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 7 months ago
• xjtu-omics / HiCAT
  HiCAT new project
  ☆27Updated last year
• lardo / khaper
  ☆27Updated 2 years ago
• zeeev / smartie-sv
  calling SVs from Blasr contig level alignments
  ☆54Updated 7 years ago
• Immortal2333 / Telomeres_and_Centromeres
  This is a method to find telomeres and centromeres in plants.
  ☆39Updated last year
• simon19891216 / CentIER
  ☆29Updated 6 months ago
• Dee-chen / Tree2gd
  ☆39Updated 2 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆35Updated 2 years ago
• annaprotasio / TE_ManAnnot
  Accompanying repository for our publications on manual curation methods for Transposable Elements.
  ☆20Updated 8 months ago
• tangerzhang / calc_switchErr
  ☆27Updated 3 years ago
• JiaoLab2021 / SynDiv
  A tool for quick and accurate calculation of syntenic diversity.
  ☆35Updated 2 months ago
• srividya22 / geneLift
  Gene model transfer from closely related reference genomes using cDNA alignments
  ☆10Updated 4 years ago
• JiaoLab2021 / EVG
  A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads
  ☆37Updated 8 months ago
• ohdongha / OrthNet
  CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…
  ☆9Updated 2 years ago