INTABiotechMJ / MITE-TrackerLinks
MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes
☆20Updated last year
Alternatives and similar repositories for MITE-Tracker
Users that are interested in MITE-Tracker are comparing it to the libraries listed below
Sorting:
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- Genome Annotation Pipeline☆36Updated last year
- ☆30Updated 9 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- ☆42Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 3 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆48Updated 4 months ago
- Plant genome assembly and annotation pipeline using snakemake☆47Updated 4 months ago
- a Semi-automated pipeline for assembling T2T genome☆23Updated last month
- Likelihood-based Selective Sweep Detection☆40Updated last year
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 7 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆40Updated 2 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- ☆38Updated 2 months ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆60Updated 3 months ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 6 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆25Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated last year
- ☆29Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Draw a dot plot from a paf alignment☆34Updated 3 weeks ago
- ☆45Updated 2 years ago