Gardner-BinfLab / deltaBS
Quantifying the significance of genetic variation using probabilistic profile-based methods.
☆19Updated 3 years ago
Alternatives and similar repositories for deltaBS:
Users that are interested in deltaBS are comparing it to the libraries listed below
- Find Unique genomic Regions☆29Updated last month
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 10 months ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.☆19Updated 6 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 3 months ago
- Intra-species bacterial contamination detection☆25Updated last week
- Gene-flank analysis tool☆27Updated 2 months ago
- ☆12Updated 3 years ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Formats Roary output for viewing in FriPan☆11Updated 6 years ago
- strain-level analysis tools☆34Updated 4 months ago