Gardner-BinfLab / deltaBSLinks
Quantifying the significance of genetic variation using probabilistic profile-based methods.
☆19Updated 4 years ago
Alternatives and similar repositories for deltaBS
Users that are interested in deltaBS are comparing it to the libraries listed below
Sorting:
- Find Unique genomic Regions☆30Updated 2 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 9 months ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Colinear block visualisation tool☆31Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- ☆31Updated last year
- Gene-flank analysis tool☆27Updated 6 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago