Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels
☆25Oct 24, 2025Updated 10 months ago
Alternatives and similar repositories for thirdkind
Users that are interested in thirdkind are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆82May 2, 2026Updated 3 months ago
- Gene tree - species tree reconciliation from gene tree distributions☆43Apr 30, 2026Updated 4 months ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 3 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆55May 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Apr 11, 2026Updated 4 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- Process, visualize, and analyze phylogenetic trees☆13Updated this week
- An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.☆15Feb 18, 2026Updated 6 months ago
- A tool to root phylogenies☆23Sep 5, 2024Updated last year
- ☆13Nov 12, 2025Updated 9 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆41Aug 16, 2026Updated 2 weeks ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆14Oct 21, 2021Updated 4 years ago
- Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits☆14Sep 27, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Linear-time rooting of phylogenetic trees☆18Jun 12, 2023Updated 3 years ago
- Algorithm For Gene Order Reconstruction in Ancestors☆86Jul 8, 2026Updated last month
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆203Jan 29, 2026Updated 7 months ago
- Implementation of the TreeShrink problem☆58May 28, 2026Updated 3 months ago
- Bayesian network toolkit, with applications for phylogenetic analysis☆11Updated this week
- MCMCtree tutorials☆30May 27, 2024Updated 2 years ago
- Fast, accurate species tree estimation.☆13Aug 17, 2026Updated 2 weeks ago
- Visualising discordant reads☆16Sep 2, 2015Updated 10 years ago
- A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution☆30Mar 11, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Modeling gene duplication, loss, and coalescence (through parsimony)☆10Jun 18, 2020Updated 6 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆24May 19, 2020Updated 6 years ago
- A curated list of awesome Bioinformatics software, tools and resources☆30Aug 21, 2026Updated last week
- ☆14Apr 14, 2026Updated 4 months ago
- Dynamic CPU/GPU power scaling to maximize renewable energy usage and reduce emissions☆17Apr 11, 2025Updated last year
- ☆43Apr 2, 2024Updated 2 years ago
- A dotplot application for DNA/RNA sequence☆12Nov 28, 2022Updated 3 years ago
- ☆10Updated this week
- Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.☆12Jun 23, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆79Sep 30, 2024Updated last year
- I can haz all the phylogenies☆20Dec 5, 2022Updated 3 years ago
- RepeatIdentifier☆75Mar 19, 2025Updated last year
- ☆26Aug 14, 2026Updated 2 weeks ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- A phylogeny dating method using least-squares algorithms and criteria☆34Oct 25, 2024Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆123Jul 22, 2025Updated last year