mingjingsi / FIRMLinks
Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets
☆13Updated 3 years ago
Alternatives and similar repositories for FIRM
Users that are interested in FIRM are comparing it to the libraries listed below
Sorting:
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- ☆18Updated 3 years ago
- ☆18Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Network construction Algorithm☆22Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆24Updated 3 years ago
- R package for generalized binary covariance decomposition.☆11Updated 4 months ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 11 months ago
- ☆15Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 6 years ago
- python API to the CoGAPS NMF package☆19Updated 6 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated last year
- InstaPrism is an R package for fast implementation of BayesPrism☆45Updated last year
- ☆15Updated 2 years ago
- The million-scale method for single-cell analysis☆10Updated 2 years ago
- ☆12Updated 4 years ago
- ☆17Updated last year
- ☆21Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆20Updated 4 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- ☆24Updated 2 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year