Alternatives and similar repositories for FIRM

Users that are interested in FIRM are comparing it to the libraries listed below

• lusystemsbio / NetAct
  Network construction Algorithm
  ☆22Updated last year
• dbrg77 / ISSAAC-seq
  ☆18Updated 2 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 8 months ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆24Updated 3 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 6 months ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 3 years ago
• stephenslab / gbcd
  R package for generalized binary covariance decomposition.
  ☆13Updated 5 months ago
• parveendabas / GBMatlas
  ☆18Updated 3 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• gxiaolab / scAllele
  ☆39Updated 3 months ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• ML4BM-Lab / ELATUS
  ☆13Updated 8 months ago
• soumelis-lab / ICELLNET
  ☆21Updated 5 months ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated 2 months ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 6 years ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated 2 years ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆21Updated 2 years ago
• ludvigla / STUtility_web_site
  ☆15Updated 3 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• McGranahanLab / ImmuneLENS
  ☆15Updated 9 months ago
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• OscarGVelasco / ClusterFoldSimilarity
  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
  ☆24Updated 7 months ago
• CostaLab / scrna_seurat_pipeline
  comprehensive analysis of single-cell transcriptomics data
  ☆25Updated 8 months ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆27Updated 5 years ago
• mqzhanglab / BSDE
  A single-cell RNAseq differential expression analysis approach in case-control study
  ☆10Updated 3 years ago