Alternatives and similar repositories for FIRM

Users that are interested in FIRM are comparing it to the libraries listed below

• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆14Updated 6 months ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆12Updated 2 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• qingnanl / gsdensity
  ☆9Updated 10 months ago
• zhang-bin-98 / A-spatial-transcriptome-landscape-of-mouse-aging
  ☆13Updated 7 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆19Updated last year
• ludvigla / STUtility_web_site
  ☆14Updated 3 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆31Updated 9 months ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 5 years ago
• SeadonXing / SSN_scRNA-seq
  The codes and files for the study of subsolid nodules (SSN).
  ☆14Updated 4 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• gxiaolab / scAllele
  ☆34Updated last year
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• McGranahanLab / ImmuneLENS
  ☆13Updated 3 months ago
• ML4BM-Lab / ELATUS
  ☆11Updated 2 months ago
• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆22Updated 2 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆30Updated 2 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 2 weeks ago
• soumelis-lab / ICELLNET
  ☆20Updated last year
• Morriseylab / scExtras
  ☆13Updated 10 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆20Updated last year
• epigen / scifiRNA-seq_publication
  The million-scale method for single-cell analysis
  ☆10Updated last year
• parveendabas / GBMatlas
  ☆18Updated 2 years ago