liulab-dfci / lisaLinks
epigenome analysis to rank transcription factors
☆13Updated 5 years ago
Alternatives and similar repositories for lisa
Users that are interested in lisa are comparing it to the libraries listed below
Sorting:
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- scover☆23Updated last year
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- RNA velocity validation☆22Updated 3 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- Fast motif matching in R☆46Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- benchmark for single-cell RNA-seq imputation methods☆26Updated last year
- ☆12Updated 4 years ago
- ☆23Updated last year
- Gene Expression Decomposition and Integration☆19Updated 7 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 8 months ago
- Vaeda method for computational doublet annotation☆17Updated last year
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated last month
- ☆12Updated 4 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆18Updated 3 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated this week