mqzhanglab / BSDE
A single-cell RNAseq differential expression analysis approach in case-control study
☆9Updated 3 years ago
Alternatives and similar repositories for BSDE:
Users that are interested in BSDE are comparing it to the libraries listed below
- The million-scale method for single-cell analysis☆10Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆11Updated 2 weeks ago
- ☆17Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆12Updated 2 years ago
- python API to the CoGAPS NMF package☆19Updated last year
- ☆10Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- ☆12Updated 4 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- ☆12Updated 2 years ago
- ☆20Updated last year
- cross-species analysis of cell identities, markers and regulations☆12Updated 2 weeks ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- ☆12Updated 5 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆14Updated 6 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Updated 3 years ago
- Transcriptional Regulatory Inference Analysis from Gene Expression (TRIAGE)☆9Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Landscape Single Cell Entropy☆19Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated 2 weeks ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- ☆29Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago