Alternatives and similar repositories for Portal:

Users that are interested in Portal are comparing it to the libraries listed below

• dpeerlab / ENVI
  ☆43Updated 3 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆31Updated 8 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆56Updated 2 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆48Updated 3 months ago
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆65Updated last week
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆30Updated 6 months ago
• xiaoyeye / TFvelo
  ☆44Updated 8 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆39Updated 3 years ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆27Updated 11 months ago
• CostaLab / scMEGA
  scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
  ☆37Updated 3 months ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆30Updated 6 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆24Updated this week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆65Updated 3 weeks ago
• QuKunLab / SPACEL
  ☆51Updated 5 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆32Updated last year
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆22Updated 3 months ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆62Updated 2 months ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆11Updated 9 months ago
• zcang / SpaOTsc
  ☆45Updated 2 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆47Updated this week
• yutongo / TIGON
  ☆34Updated 11 months ago
• theislab / scArches-reproducibility
  Reproducing result from the paper
  ☆33Updated 3 years ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 8 months ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆60Updated 3 years ago
• Durenlab / LINGER
  ☆83Updated 2 weeks ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆51Updated 9 months ago
• AllonKleinLab / cospar
  ☆26Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 7 months ago
• YosefLab / velovi
  ☆39Updated this week