YangLabHKUST / PortalLinks
Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
☆33Updated 2 years ago
Alternatives and similar repositories for Portal
Users that are interested in Portal are comparing it to the libraries listed below
Sorting:
- ☆61Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆40Updated last year
- Gene group activity utility functions for Scanpy☆99Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆73Updated 11 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- End-to-end analysis of spatial multi-omics data☆101Updated last month
- CAST package☆41Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- ☆52Updated 2 months ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- ☆34Updated 8 months ago
- ☆45Updated 5 months ago
- Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space☆79Updated 3 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 3 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- ☆126Updated 3 years ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆29Updated last year
- ☆31Updated 10 months ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆111Updated 2 months ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆70Updated 5 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 2 months ago
- Reproducing result from the paper☆34Updated 4 years ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- ☆21Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆33Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month