a tool to detect differentially expressed circular RNA
☆13Nov 12, 2025Updated 5 months ago
Alternatives and similar repositories for DEBKS
Users that are interested in DEBKS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for lncRNA, Circular RNA, and novel mRNA identification.☆11May 5, 2023Updated 2 years ago
- NaRnEA (Nonparametric analytical Rank-based Enrichment Analysis)☆11Mar 2, 2023Updated 3 years ago
- miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis☆16Jun 29, 2025Updated 9 months ago
- k-mer probability logo☆11Jan 20, 2023Updated 3 years ago
- circular RNA analysis toolset☆89Sep 8, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data☆58Mar 30, 2026Updated 2 weeks ago
- miRTrace☆12Jun 14, 2023Updated 2 years ago
- FEELnc : FlExible Extraction of LncRNA☆93Jul 23, 2025Updated 8 months ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated last year
- circular RNA quantification tools☆31Jun 17, 2024Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 3 months ago
- Long RNA-seq analysis workflow☆22Oct 13, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 5 months ago
- microRNA PREdiction From small RNA-seq data☆32Dec 28, 2017Updated 8 years ago
- Known and Novel IsoForm Explorer. Statistically based splicing detection for circular and linear isoforms☆33Jul 14, 2017Updated 8 years ago
- Mapping 3′UTR alternative polyadenylation quantitative trait loci through population-scale transcriptomic and genomic data☆14Mar 15, 2023Updated 3 years ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆68Dec 13, 2024Updated last year
- Reference data for cell-type assignment with clustifyr☆13Nov 3, 2022Updated 3 years ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- Cancer circRNA identification pipeline with an ensemble approach☆18Dec 4, 2024Updated last year
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 5 years ago
- ☆23May 16, 2020Updated 5 years ago
- ☆16Oct 18, 2023Updated 2 years ago
- Kosmos technical report figures, validation code, and reproducible analyses☆28Nov 4, 2025Updated 5 months ago
- direct comparison of circular and linear RNA expression☆24Jan 17, 2021Updated 5 years ago
- 基因组组装注释流程及脚本☆16Feb 12, 2023Updated 3 years ago
- A suite of tools for evolutionary and functional analysis of microRNA binding sites http://www.targetscan.org☆47Oct 29, 2018Updated 7 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Apr 2, 2023Updated 3 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 6 years ago
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 3 years ago
- ☆12Jan 8, 2026Updated 3 months ago
- The codes to assemble two sorghum cultivars☆10May 11, 2024Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year