a framework for predicting global protein-protein interaction networks from dynamic mass spec data
☆25Jul 29, 2026Updated 3 months ago
Alternatives and similar repositories for tapioca
Users that are interested in tapioca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets☆14Nov 21, 2025Updated 11 months ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated last year
- ☆13Feb 28, 2026Updated 8 months ago
- Error-controlled interaction discovery in machine learning models☆26Jun 24, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Skip the peaks and expose RNA-binding in CLIP data☆10Updated this week
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆33Jan 8, 2024Updated 2 years ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆30Dec 21, 2023Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 4 years ago
- A tool for accurate protein complex structure prediction using diverse experimental restraints. (JAX version)☆40Jul 11, 2026Updated 3 months ago
- gapped-kmer based whole genome alignment software☆11Jun 11, 2026Updated 4 months ago
- ☆14Jul 17, 2024Updated 2 years ago
- ☆17Oct 30, 2023Updated 3 years ago
- ☆13Jul 11, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Dec 23, 2023Updated 2 years ago
- iCodon customizes gene expression based on the codon composition☆17Oct 28, 2023Updated 3 years ago
- ☆14Jul 20, 2026Updated 3 months ago
- ☆10Jun 5, 2021Updated 5 years ago
- Protein language model trained on coding DNA☆56Oct 20, 2024Updated 2 years ago
- BrainPepPass: A framework based on supervised dimensionality reduction for predicting blood-brain barrier-penetrating peptides.☆12Jun 5, 2023Updated 3 years ago
- Protein-protein binding affinity benchmark☆20Feb 14, 2025Updated last year
- Fully automated high-throughput MD pipeline☆109Sep 18, 2026Updated last month
- ☆14Oct 27, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- GTalign, high-performance macromolecular structure alignment, superposition and search☆61Oct 22, 2026Updated last week
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated last year
- Various integrations to the Schrodinger ecosystem. With major interest on analysis tools for Molecular Dynamics simulations run with Desm…☆23Apr 14, 2026Updated 6 months ago
- Streamlined version of VirtualFlow combining both VFVS and VFLP☆22Jul 6, 2026Updated 3 months ago
- FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.☆14Aug 3, 2026Updated 2 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- ☆26May 19, 2024Updated 2 years ago
- ☆11May 3, 2022Updated 4 years ago
- ☆21Nov 15, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆34Aug 27, 2025Updated last year
- This is the public repository for the EPIC tool.☆19Aug 3, 2022Updated 4 years ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆33Jul 28, 2026Updated 3 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 3 years ago
- ☆27Dec 6, 2022Updated 3 years ago
- ☆14Sep 1, 2024Updated 2 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆383Jun 3, 2024Updated 2 years ago