FunctionLab / tapiocaLinks
a framework for predicting global protein-protein interaction networks from dynamic mass spec data
☆24Updated last year
Alternatives and similar repositories for tapioca
Users that are interested in tapioca are comparing it to the libraries listed below
Sorting:
- HLA-II ligand predictor.☆44Updated 2 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆32Updated last month
- ☆18Updated last year
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆30Updated last month
- HLA-I ligand predictor☆42Updated 8 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- ☆14Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- ☆18Updated last year
- ☆76Updated last year
- Absolve antibody variable domain sequence analysis☆18Updated 6 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 4 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- ☆38Updated last year
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆13Updated 3 months ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- ☆27Updated 4 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Functional Embedding of Gene Signatures☆46Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Updated 7 years ago
- surrogate quantitative interpretability for deepnets☆24Updated 2 weeks ago