R interface to megadepth: BigWig and BAM related utilities
☆13Dec 12, 2024Updated last year
Alternatives and similar repositories for megadepth
Users that are interested in megadepth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated this week
- The Bioconductor Build System☆12Mar 9, 2026Updated 2 weeks ago
- Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options☆16May 7, 2019Updated 6 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Jun 26, 2019Updated 6 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- CREAM (Clustering of Functional Regions Analysis Method) is a new method for identification of clusters of functional regions (COREs) wi…☆13Feb 11, 2021Updated 5 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- R plots styled with css☆11Nov 10, 2024Updated last year
- scRNA-seq data visualization from scrattch☆29Aug 20, 2025Updated 7 months ago
- TOP results by CONfident efFECT Sizes.☆15Dec 9, 2024Updated last year
- Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point f…☆11Dec 11, 2020Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Feb 23, 2026Updated last month
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- A 3-day R course given in University College Cork that encompasses various elements off reproducible research facilitated through RStudio…☆11Jun 17, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- mutation(barcode) caller for 10x single cell data☆44Jun 14, 2020Updated 5 years ago
- BradleyTerry2 package for Bradley-Terry models in R☆24Apr 10, 2025Updated 11 months ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 4 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆19Jan 9, 2026Updated 2 months ago
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …☆13Dec 12, 2024Updated last year
- Clone identification from single-cell data☆63Nov 10, 2022Updated 3 years ago
- ☆12Mar 15, 2025Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 4 years ago
- A tidyverse and grammar of graphics powered line traces visualizer☆30Sep 3, 2025Updated 6 months ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- S3norm ver2 + IDEAS epigenetic state / master peak list☆12Sep 22, 2023Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Dec 10, 2024Updated last year
- ☆35Mar 17, 2026Updated last week
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆22Nov 16, 2020Updated 5 years ago
- AI-Driven Code Generation, Explanation and Execution for Data Analysis☆23Sep 11, 2024Updated last year
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 3 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- BigWig and BAM utilities☆103Mar 26, 2024Updated last year
- Fast run-length encoding with NA support and results as a data.frame☆17Oct 15, 2020Updated 5 years ago