LieberInstitute / megadepthLinks
R interface to megadepth: BigWig and BAM related utilities
☆12Updated 11 months ago
Alternatives and similar repositories for megadepth
Users that are interested in megadepth are comparing it to the libraries listed below
Sorting:
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 5 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated 11 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 6 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated last month
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- R interface to 'Gos'☆39Updated 2 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 7 months ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- Gene-level general linear mixed model☆23Updated last month
- ☆10Updated 6 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 7 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 3 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Updated 7 months ago
- ☆20Updated 2 weeks ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆13Updated 6 years ago
- R package providing Variance Stabilizing Transformations appropriate for RNA-Seq data☆21Updated 5 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last month
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Updated last month
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated last year
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 5 months ago
- Send R code/R scripts/shell commands to LSF cluster without leaving R☆26Updated 8 months ago
- Toolbox package for organizing and working with TCGA data☆28Updated this week
- BioCarta pathway images☆11Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago