LieberInstitute / megadepthLinks
R interface to megadepth: BigWig and BAM related utilities
☆12Updated 5 months ago
Alternatives and similar repositories for megadepth
Users that are interested in megadepth are comparing it to the libraries listed below
Sorting:
- ☆10Updated 6 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last month
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- TOP results by CONfident efFECT Sizes.☆14Updated 5 months ago
- the manifesto, workshops and tutorials of the tidy transcriptomics☆13Updated last month
- Gene-level general linear mixed model☆21Updated 4 months ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Code for EpiMap data browser☆14Updated last year
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 4 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 2 months ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 2 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- R interface to 'Gos'☆39Updated 2 years ago
- ☆15Updated 2 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 8 months ago
- Core utilities for single-cell RNA-seq☆12Updated last month
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- ☆20Updated last month
- 🐶 hlabud: HLA genotype analysis in R☆16Updated last month