semraulab / phiclustLinks
A clusterability measure for scRNA-seq data.
☆18Updated 3 years ago
Alternatives and similar repositories for phiclust
Users that are interested in phiclust are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆39Updated 2 months ago
- ☆32Updated 9 months ago
- ☆29Updated 2 years ago
- ☆23Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆52Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆51Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- ☆39Updated 4 years ago
- Network construction Algorithm☆22Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 4 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 2 weeks ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆44Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆43Updated 4 years ago
- scWGCNA☆61Updated 3 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated 3 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago