A clusterability measure for scRNA-seq data.
☆18Feb 2, 2022Updated 4 years ago
Alternatives and similar repositories for phiclust
Users that are interested in phiclust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- Very large scale k-mer counting and analysis on Apache Spark.☆18Mar 2, 2026Updated 3 weeks ago
- ☆24Mar 4, 2026Updated 2 weeks ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- Tools for assessing clustering robustness☆30Mar 16, 2026Updated last week
- ☆17Jul 12, 2024Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆123Sep 7, 2024Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 4 years ago
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 4 years ago
- ☆12Oct 31, 2020Updated 5 years ago
- ☆21Dec 23, 2024Updated last year
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Jan 6, 2026Updated 2 months ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- ☆38Feb 9, 2026Updated last month
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆26Feb 9, 2026Updated last month
- ☆16May 25, 2021Updated 4 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- Complex Heatmaps Using Base Graphics☆14Updated this week
- ☆16Feb 17, 2025Updated last year
- ☆27Sep 2, 2021Updated 4 years ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆16Jun 1, 2021Updated 4 years ago
- ☆11Jun 10, 2024Updated last year
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 8 months ago
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆10Jul 21, 2025Updated 8 months ago
- Identifying external communication signals using single-cell transcriptomics data☆21Jun 10, 2024Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last week
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- R package with Shiny application for DGE analysis☆12Jan 8, 2024Updated 2 years ago
- Mapping-free software for fishing relevant reads in an RNA-Seq sample☆19Dec 9, 2020Updated 5 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- python API to the CoGAPS NMF package☆19May 19, 2025Updated 10 months ago
- ☆19Sep 20, 2021Updated 4 years ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Nov 2, 2021Updated 4 years ago
- ☆10May 14, 2025Updated 10 months ago
- Module 4 for HKU Single-cell Workshop☆12Jul 6, 2021Updated 4 years ago
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆86Feb 16, 2026Updated last month
- Reference mapping for single-cell genomics☆400Dec 2, 2025Updated 3 months ago