semraulab / phiclust
A clusterability measure for scRNA-seq data.
☆18Updated 3 years ago
Alternatives and similar repositories for phiclust:
Users that are interested in phiclust are comparing it to the libraries listed below
- ☆45Updated 7 months ago
- ☆33Updated 11 months ago
- ☆29Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- ☆30Updated 2 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 8 months ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆36Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- ☆15Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- ☆20Updated 8 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆29Updated 6 months ago
- ☆39Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last week
- scover☆23Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- ☆20Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago