semraulab / phiclustLinks
A clusterability measure for scRNA-seq data.
☆18Updated 3 years ago
Alternatives and similar repositories for phiclust
Users that are interested in phiclust are comparing it to the libraries listed below
Sorting:
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated last year
- ☆32Updated 6 months ago
- ☆49Updated last year
- ☆37Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- InstaPrism is an R package for fast implementation of BayesPrism☆37Updated last year
- Network construction Algorithm☆22Updated 11 months ago
- Tools for assessing clustering robustness☆25Updated last week
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆23Updated 8 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆41Updated 4 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Updated this week
- ☆29Updated 2 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆53Updated 2 years ago
- Single-cell Case Control Analysis☆51Updated 9 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 8 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- ☆39Updated 4 years ago
- scWGCNA☆61Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆55Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ☆41Updated last month
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated last year
- scover☆23Updated last year
- binned motif enrichment analysis and visualisation☆41Updated last week