ChangSuBiostats / CS-CORE
R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data
☆20Updated last year
Alternatives and similar repositories for CS-CORE:
Users that are interested in CS-CORE are comparing it to the libraries listed below
- ☆30Updated 2 months ago
- Functional Inference of Gene Regulation☆41Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 3 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆62Updated 5 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆26Updated 8 months ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- ☆37Updated last week
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- ☆29Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- ☆40Updated 3 years ago
- ☆33Updated 11 months ago
- SCDC☆45Updated last year
- scWGCNA☆58Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 2 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- ☆50Updated 8 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆39Updated 2 months ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Removing empty droplets in multiome datasets☆16Updated 9 months ago
- ☆36Updated 6 months ago