Alternatives and similar repositories for HieRFIT

Users that are interested in HieRFIT are comparing it to the libraries listed below

• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated 2 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated 2 months ago
• CenterForStatistics-UGent / SPsimSeq
  Semi-parametric simulation of bulk and single cell RNA-seq data
  ☆10Updated last year
• pachterlab / GSP_2019
  Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."
  ☆11Updated 5 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 5 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆28Updated 2 years ago
• const-ae / transformGamPoi-Paper
  ☆29Updated 2 years ago
• vals / python-gprofiler
  ☆13Updated 6 years ago
• JamesJoly / DGSEA
  An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…
  ☆14Updated 2 years ago
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆10Updated 4 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated 3 months ago
• boutroslab / Supplemental-Material
  Repository for supplemental material of manuscripts
  ☆18Updated 4 years ago
• danro9685 / SparseSignatures
  Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…
  ☆11Updated 3 months ago
• ocbe-uio / DIscBIO
  A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
  ☆13Updated 2 weeks ago
• heyuan7676 / ts_eQTLs
  Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
  ☆22Updated 5 years ago
• fperraudeau / singlecellworkflow
  Tutorial for the analysis of scRNA-seq data in R
  ☆18Updated 7 years ago
• ELELAB / MoonlightR
  ☆17Updated last year
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆12Updated last year
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated last year
• leeprichman / ClonoCluster
  Combined clonality and transcriptome scRNAseq clustering method
  ☆11Updated 3 years ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆17Updated 9 months ago
• Drinchai / BloodGen3Module
  This R package for performing module repertoire analyses and generating fingerprint representations
  ☆18Updated 4 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆24Updated 3 months ago
• liuhong-jia / scAnno
  ☆27Updated 7 months ago
• DiseaseNeuroGenomics / dreamlet
  Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models
  ☆20Updated 3 months ago
• jingshuw / descend
  ☆19Updated 4 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆15Updated 6 years ago
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated 9 months ago
• unistbig / netGO
  R/Shiny package for network-integrated pathway enrichment analysis
  ☆13Updated 5 years ago
• raphael-group / netNMF-sc
  netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data
  ☆23Updated 4 years ago