Alternatives and similar repositories for HieRFIT:

Users that are interested in HieRFIT are comparing it to the libraries listed below

• pachterlab / GSP_2019
  Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."
  ☆11Updated 4 years ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 3 years ago
• ELELAB / MoonlightR
  ☆17Updated 8 months ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated last year
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆24Updated 6 months ago
• leeprichman / ClonoCluster
  Combined clonality and transcriptome scRNAseq clustering method
  ☆11Updated 2 years ago
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆9Updated 3 years ago
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 3 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• LieberInstitute / megadepth
  R interface to megadepth: BigWig and BAM related utilities
  ☆11Updated last month
• laurenhsu1 / corral
  Dimensionality reduction and batch integration methods for single cell data
  ☆16Updated last year
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 5 years ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• zijianni / scCB2
  R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data
  ☆10Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated last month
• kharchenkolab / sccore
  Core utilities for single-cell RNA-seq
  ☆12Updated last month
• ocbe-uio / DIscBIO
  A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
  ☆12Updated last year
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆10Updated 2 months ago
• fperraudeau / singlecellworkflow
  Tutorial for the analysis of scRNA-seq data in R
  ☆17Updated 6 years ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• vals / python-gprofiler
  ☆12Updated 5 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆19Updated 3 months ago
• wgmao / NIFA
  Non-negative Independent Factor Analysis for single cell RNA-seq
  ☆11Updated 2 years ago
• praneet1988 / Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ
  Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.
  ☆14Updated 5 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• liuhong-jia / scAnno
  ☆23Updated last year
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated 9 months ago