Alternatives and similar repositories for Ribo-seQC

Users that are interested in Ribo-seQC are comparing it to the libraries listed below

• lcalviell / ORFquant
  An R package for Splice-aware quantification of translation using Ribo-seq data
  ☆18Updated last year
• ohlerlab / RiboseQC
  Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
  ☆18Updated last year
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• AngelCampos / txtools
  An R package to process and analyze transcriptomic data
  ☆17Updated 8 months ago
• YangLab / bamTobw
  Convert BAM files to bigWig files with a simple command
  ☆20Updated 6 years ago
• Kingsford-Group / ribomap
  ☆12Updated 9 years ago
• erhard-lab / price
  Improved Ribo-seq enables identification of cryptic translation events
  ☆13Updated 7 years ago
• battle-lab / twn_tsn
  Transcriptome-wide network
  ☆16Updated 5 years ago
• kundajelab / idr
  IDR
  ☆31Updated 2 years ago
• comprna / ORQAS
  ORF Quantification pipeline for Alternative Splicing
  ☆16Updated 4 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• mbassalbioinformatics / ChIP-AP
  An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
  ☆22Updated 7 months ago
• TranslationalBioinformaticsUnit / GeneSetCluster
  a tool for summarizing and integrating gene-set analysis results
  ☆16Updated 9 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated 2 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated 10 months ago
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated 11 months ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆28Updated 3 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆17Updated last year
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated last year
• Kuanhao-Chao / RNASeqR
  📊 An R package of RNA-seq workflow
  ☆16Updated 3 years ago
• Shicheng-Guo / HowtoBook
  Readme
  ☆10Updated 5 years ago
• wyguo / TSIS
  TSIS: an R package to infer time-series isoform switch of alternative splicing
  ☆3Updated 2 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆17Updated 10 months ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆16Updated last year
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆18Updated last week
• schatzlab / scikit-ribo
  Accurate estimation and robust modelling of translation dynamics at codon resolution
  ☆20Updated 7 years ago