quadbio / simspecLinks
Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
☆32Updated last year
Alternatives and similar repositories for simspec
Users that are interested in simspec are comparing it to the libraries listed below
Sorting:
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- CellRank's reproducibility repository.☆15Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 weeks ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆27Updated last month
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆69Updated 9 months ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Single-cell Case Control Analysis☆50Updated 8 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 3 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆54Updated 2 months ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago