quadbio / simspecLinks
Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
☆33Updated last year
Alternatives and similar repositories for simspec
Users that are interested in simspec are comparing it to the libraries listed below
Sorting:
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- ☆58Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 months ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆21Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- CellRank's reproducibility repository.☆15Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 10 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- ☆10Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆33Updated this week
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆36Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆19Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago