quadbio / simspecLinks
Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
☆35Updated last year
Alternatives and similar repositories for simspec
Users that are interested in simspec are comparing it to the libraries listed below
Sorting:
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆50Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 11 months ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Ordering gene-expression and functional events in single-cell experiments☆24Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆33Updated 10 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- CellRank's reproducibility repository.☆15Updated 3 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated last month
- Estimation of Single-Cell Potency with Single Cell Entropy☆42Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆50Updated 11 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆12Updated 11 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year