An R package for Splice-aware quantification of translation using Ribo-seq data
☆20Dec 20, 2023Updated 2 years ago
Alternatives and similar repositories for ORFquant
Users that are interested in ORFquant are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying genome-wide translated open reading frames using ribosome profiling☆26May 30, 2023Updated 3 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆19Aug 9, 2023Updated 2 years ago
- A comprehensive analysis tool for Ribo-seq and small RNA-seq data☆10Jun 22, 2020Updated 6 years ago
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Feb 14, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Exploring Isoform-specific interactions☆13Updated this week
- Scripts and instructions to apply RiboTIE on Ribo-seq data☆20Jul 22, 2025Updated last year
- ☆10Jan 15, 2020Updated 6 years ago
- Model-based analysis of APA using 3' end-linked reads☆13Aug 14, 2021Updated 4 years ago
- SODAR: System for Omics Data Access and Retrieval☆22Updated this week
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated 3 months ago
- Improved Ribo-seq enables identification of cryptic translation events☆17Feb 13, 2018Updated 8 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- Hierarchical Random Forest for Information Transfer☆13May 26, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- ☆67Mar 19, 2026Updated 4 months ago
- A list of bioinformatic tools for working with Ribo-Seq data☆24Apr 11, 2024Updated 2 years ago
- ☆14Mar 18, 2016Updated 10 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆23Jun 27, 2017Updated 9 years ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆12Feb 25, 2022Updated 4 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Search the biomedical literature for protein interactions and protein associations☆11Nov 24, 2023Updated 2 years ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆53Oct 21, 2025Updated 9 months ago
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- Individual level Differential Expression Analysis for Single cells☆27Dec 24, 2022Updated 3 years ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆14May 22, 2025Updated last year
- ☆16Feb 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 4 months ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated 2 years ago
- Numerical Run Length Encoding and Arithmetic in Cython☆19Jan 28, 2026Updated 5 months ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- A clusterability measure for scRNA-seq data.☆20Feb 2, 2022Updated 4 years ago
- icSHAPE pipeline☆32Oct 1, 2015Updated 10 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago