lcalviell / ORFquantLinks
An R package for Splice-aware quantification of translation using Ribo-seq data
☆19Updated last year
Alternatives and similar repositories for ORFquant
Users that are interested in ORFquant are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆19Updated 4 months ago
- processes GoT amplicon data and generates a table of metrics☆31Updated 3 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- ☆23Updated 4 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated 10 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 10 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Model-based analysis of APA using 3' end-linked reads☆10Updated 4 years ago
- A single cell sequencing read simulator.☆33Updated 10 months ago
- ☆23Updated 6 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 11 months ago
- Define regions in the genome☆32Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆60Updated 8 months ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- An R interface to the MEME Suite☆52Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆13Updated 9 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- a tool for summarizing and integrating gene-set analysis results☆16Updated last year
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago