lcalviell / ORFquant
An R package for Splice-aware quantification of translation using Ribo-seq data
☆18Updated last year
Alternatives and similar repositories for ORFquant:
Users that are interested in ORFquant are comparing it to the libraries listed below
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- ☆15Updated 2 years ago
- ☆23Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆22Updated last year
- Model-based analysis of APA using 3' end-linked reads☆9Updated 3 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆17Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- ☆21Updated last month
- ☆12Updated 9 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- iread☆24Updated 3 years ago
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- ☆28Updated 4 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Updated 4 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Updated 5 years ago
- ☆12Updated 3 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 6 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆16Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 7 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago