lcalviell / ORFquantLinks
An R package for Splice-aware quantification of translation using Ribo-seq data
☆19Updated last year
Alternatives and similar repositories for ORFquant
Users that are interested in ORFquant are comparing it to the libraries listed below
Sorting:
- ☆15Updated 3 years ago
- binned motif enrichment analysis and visualisation☆43Updated last month
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated last year
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- A single cell sequencing read simulator.☆33Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆23Updated 4 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆20Updated 7 months ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Model-based analysis of APA using 3' end-linked reads☆11Updated 4 years ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- a tool for summarizing and integrating gene-set analysis results☆16Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated 2 years ago
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Updated 3 years ago
- Junction centric alternative splicing translator☆20Updated 3 years ago
- An R interface to the MEME Suite☆53Updated 5 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Updated 7 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- A continually expanding collection of RNA-seq tools☆52Updated last month
- Workshop • Analysis of RNA-seq data☆37Updated last year
- ☆20Updated 6 years ago
- ☆23Updated 9 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago