ohlerlab / RiboseQC
Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
☆17Updated last year
Alternatives and similar repositories for RiboseQC:
Users that are interested in RiboseQC are comparing it to the libraries listed below
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- ☆27Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- ☆23Updated 3 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Comprehensive and scalable differential splicing analyses☆14Updated this week
- ☆12Updated 8 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 2 years ago
- ☆14Updated 2 years ago
- Motif manipulation functions for R.☆28Updated 3 months ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆16Updated 2 years ago
- R package wrapping bedtools☆38Updated this week
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆11Updated 6 months ago
- Scripts to import your FeatureCounts output into DEXSeq☆32Updated 6 years ago
- GENome Organisation Visual Analytics☆15Updated 3 years ago
- HOT regions paper☆11Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Peak caller for CUT&TAG data☆25Updated 2 years ago
- documentation for trackViewer☆29Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 4 months ago
- ☆9Updated 4 years ago