ohlerlab / RiboseQC
Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
☆17Updated last year
Alternatives and similar repositories for RiboseQC:
Users that are interested in RiboseQC are comparing it to the libraries listed below
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 2 months ago
- ☆14Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- ☆23Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- ☆21Updated last month
- ☆12Updated 8 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 3 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- ☆17Updated 2 years ago
- ☆19Updated 3 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 6 months ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆12Updated 5 years ago
- Snakemake pipeline for running MAJIQ☆19Updated last year
- iread☆23Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 8 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆18Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ☆13Updated last year
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 5 months ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- RNA editing tests☆16Updated 4 years ago
- ☆16Updated 5 months ago