ohlerlab / RiboseQCLinks
Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
☆18Updated 2 years ago
Alternatives and similar repositories for RiboseQC
Users that are interested in RiboseQC are comparing it to the libraries listed below
Sorting:
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- ☆17Updated last year
- ☆23Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated this week
- ☆18Updated 4 years ago
- ☆34Updated 2 weeks ago
- ☆15Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Peak caller for CUT&TAG data☆29Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Transcriptome-wide network☆16Updated 6 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆35Updated 2 weeks ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- DriverPower☆26Updated 10 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Updated last year