Alternatives and similar repositories for SSN_scRNA-seq

Users that are interested in SSN_scRNA-seq are comparing it to the libraries listed below

• chensujun / scRNA
  ☆32Updated 4 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated last year
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆26Updated last year
• molgenis / scRNA-seq
  ☆18Updated last year
• Morriseylab / scExtras
  ☆14Updated last year
• SGI-CRC / scRNA-seq
  ☆10Updated 6 years ago
• Japrin / scPip
  A pipeline for scRNA-seq data analysis
  ☆15Updated 7 months ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 7 months ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 4 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆25Updated last year
• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆34Updated last week
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 3 years ago
• gxiaolab / scAllele
  ☆39Updated 2 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆86Updated 2 years ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆13Updated 5 years ago
• meichendong / SCDC
  SCDC
  ☆45Updated 5 months ago
• ruoyan-li / RCC-spatial-mapping
  Code relating to http://dx.doi.org/10.2139/ssrn.4132721
  ☆11Updated 2 years ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆27Updated 3 years ago
• shyhihihi / MERCI
  MERCI for tracing of mitochondrion transfer between single cancer and T cells
  ☆23Updated last year