CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations for genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
☆14Jul 19, 2021Updated 5 years ago
Alternatives and similar repositories for CAISC
Users that are interested in CAISC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆11Apr 30, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Find your current location using FusedLocationProviderClient☆14Nov 15, 2017Updated 8 years ago
- মেশিন লার্নিং: হাতে কলমে 'টাইটানিক 'প্রজেক্ট ওয়ার্কবুক☆10Jul 2, 2020Updated 6 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Feb 27, 2026Updated 4 months ago
- Tutorials contain live coding and script for R programming in Bangla☆16Oct 4, 2019Updated 6 years ago
- Curriculum for DevFest 2017 at Columbia University☆14Dec 24, 2022Updated 3 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Class notes for the Machine Learning Nanodegree at Udacity☆17Jul 11, 2017Updated 9 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- Android App for Noakhali Science And Technology University☆15Nov 26, 2020Updated 5 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- ☆12Dec 1, 2021Updated 4 years ago
- Batch alignment of single-cell transcriptomics data using deep metric learning☆25Feb 5, 2024Updated 2 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- SCDC☆48Jun 20, 2025Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆13Mar 11, 2024Updated 2 years ago
- As Code Coopers Training (previously known as Virtual Tech Academy), we have launched a LMS for our students. We are open sourcing those …☆24Feb 11, 2018Updated 8 years ago
- Lesson for the shell for genomics☆11Jan 12, 2021Updated 5 years ago
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 7 months ago
- Hand Written course notes of Deep Learning Specialization by Andrew NG on Coursera☆34Apr 13, 2018Updated 8 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Implementation of entropy of mixing algorithm in python☆10Oct 19, 2022Updated 3 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- A model-based downsampling algorithm for single-cell☆10Jan 21, 2023Updated 3 years ago
- EDGE☆15Aug 30, 2020Updated 5 years ago
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆14Feb 23, 2018Updated 8 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆38Jul 9, 2026Updated last week
- Interactive multi-omics data explorer to integrate and interactively explore transcripts, proteins and metabolites data.☆13Aug 7, 2025Updated 11 months ago
- ☆15Dec 21, 2022Updated 3 years ago