CAISC (Clonal Architecture with Integrating SNV and CNV): a software to integrate copy number variation and single nucleotide mutations for genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing
☆13Jul 19, 2021Updated 4 years ago
Alternatives and similar repositories for CAISC
Users that are interested in CAISC are comparing it to the libraries listed below
Sorting:
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- RNAseq analysis with Hisat2, stringtie, and ballgown☆17Aug 9, 2019Updated 6 years ago
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated last year
- Tutorials contain live coding and script for R programming in Bangla☆16Oct 4, 2019Updated 6 years ago
- মেশিন লার্নিং: হাতে কলমে 'টাইটানিক 'প্রজেক্ট ওয়ার্কবুক☆10Jul 2, 2020Updated 5 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 11 months ago
- Curriculum for DevFest 2017 at Columbia University☆15Dec 24, 2022Updated 3 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated 2 years ago
- Class notes for the Machine Learning Nanodegree at Udacity☆17Jul 11, 2017Updated 8 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- ☆12Dec 1, 2021Updated 4 years ago
- Batch alignment of single-cell transcriptomics data using deep metric learning☆22Feb 5, 2024Updated 2 years ago
- Find your current location using FusedLocationProviderClient☆14Nov 15, 2017Updated 8 years ago
- SCDC☆46Jun 20, 2025Updated 8 months ago
- scSNV Mapping tool for 10X Single Cell Data☆25Dec 19, 2025Updated 2 months ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆24Sep 23, 2024Updated last year
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- As Code Coopers Training (previously known as Virtual Tech Academy), we have launched a LMS for our students. We are open sourcing those …☆24Feb 11, 2018Updated 8 years ago
- Android App for Noakhali Science And Technology University☆16Nov 26, 2020Updated 5 years ago
- Hand Written course notes of Deep Learning Specialization by Andrew NG on Coursera☆30Apr 13, 2018Updated 7 years ago
- Basics of the OSCA book☆14Sep 29, 2025Updated 5 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- BIC@MSKCC Variants Pipeline☆23Mar 28, 2023Updated 2 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- ☆34Jun 7, 2019Updated 6 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Feb 27, 2026Updated 2 weeks ago
- EDGE☆15Aug 30, 2020Updated 5 years ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆11Mar 11, 2024Updated 2 years ago
- 单细胞转录组实战☆14Jul 9, 2019Updated 6 years ago
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆13Feb 23, 2018Updated 8 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated last month
- An R toolkit for estimation of cell composition from bulk expression data☆81Jun 13, 2025Updated 9 months ago