simonhmartin / tutorialsLinks
Tutorials on evolutionary genomics
☆46Updated 3 years ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Hybridization detection using phylogenetic invariants☆52Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- MSMC2 Scripts☆28Updated 2 months ago
- Topology weighting by iterative sampling of sub-trees☆82Updated 11 months ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 7 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated last month
- ☆41Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- scripts used in Rice Pangenome Projects (Evolution).☆13Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- ☆45Updated 3 years ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- A organelle de novo genome assembly toolkit☆70Updated 9 months ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆74Updated last week
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆38Updated last year
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- ☆23Updated 3 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- RepeatIdentifier☆71Updated 8 months ago
- A program to call variants from genome alignment☆81Updated 7 months ago
- ☆53Updated 5 months ago