simonhmartin / tutorialsLinks
Tutorials on evolutionary genomics
☆46Updated 3 years ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- Tutorial about R package PopGenome☆44Updated 6 years ago
- MSMC2 Scripts☆27Updated last month
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- ☆41Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆51Updated last year
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆49Updated 6 months ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Updated last year
- Presentations from the course☆38Updated 2 years ago
- Topology weighting by iterative sampling of sub-trees☆82Updated 10 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆84Updated 4 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆68Updated 7 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- Portable solution to generate genome alignment chains using lastz☆59Updated last month
- RepeatIdentifier☆70Updated 8 months ago
- Useful bioinformatic scripts☆58Updated 11 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆72Updated 2 months ago
- ☆45Updated 3 years ago
- ☆53Updated 5 months ago
- A program to call variants from genome alignment☆81Updated 6 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- GONE: Scripts, programs and an example data set☆47Updated 3 months ago