simonhmartin / tutorials
Tutorials on evolutionary genomics
☆42Updated 3 years ago
Alternatives and similar repositories for tutorials:
Users that are interested in tutorials are comparing it to the libraries listed below
- MSMC2 Scripts☆24Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆31Updated last year
- ☆39Updated last year
- Hybridization detection using phylogenetic invariants☆46Updated 4 months ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- A organelle de novo genome assembly toolkit☆55Updated 3 weeks ago
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- Pan-genome Construction and Population Structure Variation Calling pipeline☆38Updated 6 months ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆33Updated last year
- ☆18Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆16Updated last month
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆37Updated last week
- Quantifying Introgression via Branch Lengths☆49Updated 2 years ago
- ☆17Updated 2 years ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆58Updated 2 months ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- A tool for plotting CAFE5 gene family expansion/contraction result☆28Updated last year
- Genome Annotation Pipeline☆35Updated 7 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆41Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆44Updated 5 months ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆65Updated 3 years ago
- Scripts of population genomics analysis☆35Updated 6 years ago
- A pipeline that accepts a VCF file to run through Admixture☆58Updated 2 months ago
- ☆39Updated 2 years ago