VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
☆105Aug 27, 2025Updated 9 months ago
Alternatives and similar repositories for VCF2Dis
Users that are interested in VCF2Dis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BamDeal: a comprehensive toolkit for bam manipulation☆55Dec 21, 2022Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆57Jun 5, 2026Updated last week
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆112May 23, 2026Updated 3 weeks ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆208Aug 15, 2024Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆217Jul 5, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆85Feb 15, 2022Updated 4 years ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated 2 years ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 4 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Aug 15, 2024Updated last year
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆83Jun 25, 2025Updated 11 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46May 23, 2026Updated 3 weeks ago
- A haplotype analysis toolkit for natural variation study.☆34Oct 3, 2023Updated 2 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆336Jul 7, 2023Updated 2 years ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Codes for the lettuce resequencing project in 2020☆31Jun 28, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ☆43Jan 19, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆471May 20, 2026Updated 3 weeks ago
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 7 months ago
- Python API for comprehensive GWAS analysis using GEMMA☆107Sep 6, 2023Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆26Sep 14, 2020Updated 5 years ago
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆31Oct 31, 2023Updated 2 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆171Updated this week
- Haplotype based scans for selection☆148Jun 5, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆190Dec 19, 2024Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆148Mar 19, 2026Updated 2 months ago
- Genome Association Predict Integrate Tools☆234May 21, 2026Updated 3 weeks ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated last year
- Tools test whether admixture occurred and more☆230May 5, 2026Updated last month
- ☆44May 8, 2024Updated 2 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆15Dec 21, 2022Updated 3 years ago