VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Format
☆104Aug 27, 2025Updated 7 months ago
Alternatives and similar repositories for VCF2Dis
Users that are interested in VCF2Dis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BamDeal: a comprehensive toolkit for bam manipulation☆54Dec 21, 2022Updated 3 years ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆54Aug 27, 2025Updated 7 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆111Mar 13, 2026Updated last month
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆205Aug 15, 2024Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆207Jul 5, 2025Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆85Feb 15, 2022Updated 4 years ago
- An ultra-fast gzip file tools☆27Apr 25, 2024Updated last year
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Aug 15, 2024Updated last year
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆82Jun 25, 2025Updated 9 months ago
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆54Feb 27, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46Mar 13, 2026Updated last month
- A haplotype analysis toolkit for natural variation study.☆31Oct 3, 2023Updated 2 years ago
- A Toolkit for analyzing next-generation DNA Re-Sequencing data☆15Feb 15, 2022Updated 4 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆333Jul 7, 2023Updated 2 years ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated 11 months ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Codes for the lettuce resequencing project in 2020☆30Jun 28, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ☆42Jan 19, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆460Mar 17, 2026Updated 3 weeks ago
- Workflow to construct linear representation of pan genome from deep WGS data and public assemblies☆30Oct 31, 2023Updated 2 years ago
- Whole Genome Alignment Tools☆223Nov 6, 2025Updated 5 months ago
- Python API for comprehensive GWAS analysis using GEMMA☆105Sep 6, 2023Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Sep 14, 2020Updated 5 years ago
- An ultra-fast and efficient genomic tool for coverage calculation☆171Feb 9, 2026Updated 2 months ago
- Haplotype based scans for selection☆145Apr 1, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆147Mar 19, 2026Updated 3 weeks ago
- Genome Association Predict Integrate Tools☆224Mar 10, 2026Updated last month
- Tools test whether admixture occurred and more☆223Sep 6, 2024Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated last year
- ☆44May 8, 2024Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆15Dec 21, 2022Updated 3 years ago