Bayesian molecular clock dating tutorial with genome-scale datasets
☆19Dec 4, 2021Updated 4 years ago
Alternatives and similar repositories for divtime
Users that are interested in divtime are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis☆16Jul 25, 2025Updated last year
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆20Dec 5, 2020Updated 5 years ago
- Simple and flexible manipulation of genomic data.☆16Apr 16, 2025Updated last year
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆114Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PhyloNetworks: a julia package with utilities for phylogenetic networks☆175Jul 2, 2026Updated 3 weeks ago
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Bash scripts for analysis of Hyb-Seq data (from raw reads to species trees/networks)☆20Jun 10, 2026Updated last month
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Sep 28, 2023Updated 2 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- ☆22Jun 24, 2026Updated last month
- Explore spaces of phylogenetic trees☆30Aug 28, 2025Updated 10 months ago
- ☆13May 15, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ViroBLAST standalone package☆16Apr 4, 2024Updated 2 years ago
- ☆10Jun 13, 2020Updated 6 years ago
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- Scripts used in the annotation of B10K genomes☆16Jun 1, 2020Updated 6 years ago
- A multi-algorithmic framework for phylogenetic inference☆14Updated this week
- Tutorials on phylogenetic and phylogenomic inference☆402Apr 12, 2026Updated 3 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Best-fit model selection☆89Mar 21, 2024Updated 2 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Dec 7, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Quantifying Introgression via Branch Lengths☆58Sep 30, 2022Updated 3 years ago
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Quartet Sampling method for phylogenetic branch support evaluation☆20Feb 26, 2024Updated 2 years ago
- Software for hybridization capture bait design☆11Jun 12, 2026Updated last month
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- shell tools for processing phylogenetic trees☆120Aug 30, 2022Updated 3 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Aug 7, 2017Updated 8 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18May 30, 2026Updated last month
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆66Sep 5, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Alignment-Based Sequence extraction☆15Feb 14, 2022Updated 4 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆85May 7, 2023Updated 3 years ago
- ☆10Mar 24, 2025Updated last year
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27May 9, 2024Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆22Sep 19, 2024Updated last year
- Orthology prediction using a graph-based, reciprocal approach with profile hidden Markov models☆33Jan 7, 2022Updated 4 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆149Nov 6, 2024Updated last year