mariodosreis / divtimeLinks
Bayesian molecular clock dating tutorial with genome-scale datasets
☆19Updated 3 years ago
Alternatives and similar repositories for divtime
Users that are interested in divtime are comparing it to the libraries listed below
Sorting:
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Updated 5 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- ☆32Updated 4 years ago
- Tutorials on phylogenomic analyses for the ForBio Phylogenomics course☆37Updated last year
- ☆40Updated last year
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 5 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- ☆26Updated 4 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Updated 10 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆73Updated last month
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- ☆22Updated 11 years ago
- Alignment-Based Sequence extraction☆15Updated 3 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆21Updated 9 months ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆21Updated 2 years ago
- Automatically exported from code.google.com/p/densitree☆28Updated 5 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆36Updated 5 months ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated last month
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Genome Annotation Pipeline☆36Updated 10 months ago