rojaff / LanGen_pipeline
Suit of R-scripts to perform landscape genomic analyses
☆13Updated 4 years ago
Alternatives and similar repositories for LanGen_pipeline:
Users that are interested in LanGen_pipeline are comparing it to the libraries listed below
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆15Updated 5 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆20Updated 6 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- ☆30Updated last week
- Scripts for population genetics analysis☆20Updated 2 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆16Updated 4 years ago
- Killifish genomics scripts☆12Updated 4 years ago
- Some codes about evolutionary history of wheats☆8Updated last year
- Sex assignment through coverage☆17Updated last year
- repository for code used in analysis of open wild wheat consortium☆16Updated 3 years ago
- ☆12Updated 11 months ago
- ☆18Updated last year
- ☆16Updated 2 years ago
- Population Genomics in R workshop☆12Updated last year
- ☆18Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆34Updated last year
- A collection of scripts I wrote when doing population genetics: calculate GC content, perform the McDonald-Kreitman test, calculate Tajim…☆9Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆20Updated 3 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆11Updated 6 years ago
- ☆14Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Build haplotye and generate figures☆18Updated 3 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- ☆18Updated 7 years ago