Demographic history from the observed spectrum of linkage disequilibrium
☆16Aug 13, 2026Updated 2 months ago
Alternatives and similar repositories for GONE2
Users that are interested in GONE2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- GPU accelerated population genetics statistics package☆34Oct 21, 2026Updated last week
- Process linked-read data, from raw sequences to phased haplotypes, batteries included. Works with WGS too!☆23Updated this week
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆24Jun 21, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- Haplotype-based inference of recent effective population size in modern and ancient DNA samples☆14Apr 4, 2025Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆22Oct 2, 2019Updated 7 years ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 6 months ago
- Code and binaries related to processing haplotagging data☆16Mar 14, 2022Updated 4 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- Local alignment search with k-bounded matching statistics.☆24Oct 12, 2026Updated 2 weeks ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 6 months ago
- association analysis of distance matrices using gradient forest approach☆16Oct 4, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆50Jun 26, 2026Updated 4 months ago
- WinPCA. A package for windowed principal component analysis.☆54Jun 9, 2026Updated 4 months ago
- RastQC - Combining FastQC, MultiQC, longread QC functionality for high-throughput sequencing data, written in Rust☆59Sep 24, 2026Updated last month
- ☆23Apr 15, 2026Updated 6 months ago
- Mosaic Genome Assembler☆28Sep 14, 2026Updated last month
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆30Aug 21, 2018Updated 8 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Unsupervised Deep Gene Finding☆40Oct 21, 2026Updated last week
- ☆14Feb 2, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆29Oct 6, 2026Updated 3 weeks ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 6 years ago
- R package and web app for spatial visualisation of admixture on a projected map☆48Aug 26, 2026Updated 2 months ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Aug 29, 2017Updated 9 years ago
- Accelerated Bayesian inference of population size history from whole genome data.☆37Apr 6, 2026Updated 6 months ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆91Jun 14, 2021Updated 5 years ago
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated 2 years ago
- Tool for DNA species identification based on variation in short k-mer frequencies☆10Aug 4, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- ☆15Oct 23, 2026Updated last week
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Population assignment analysis using R☆17Sep 21, 2026Updated last month
- snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage a…☆17Oct 1, 2026Updated 3 weeks ago
- A program for the Maximum-likelihood analysis of population genomic data.☆30Apr 1, 2021Updated 5 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆37Jan 21, 2026Updated 9 months ago